Variant report

Variant	rs9783520
Chromosome Location	chr12:85922275-85922276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:85916869..85918658-chr12:85921402..85924342,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10863013	0.92[EUR][1000 genomes]
rs10863014	0.92[EUR][1000 genomes]
rs11116805	1.00[EUR][1000 genomes]
rs11116806	0.97[EUR][1000 genomes]
rs11116808	1.00[EUR][1000 genomes]
rs11116812	1.00[EUR][1000 genomes]
rs11116815	1.00[EUR][1000 genomes]
rs11116830	1.00[EUR][1000 genomes]
rs11116852	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11116861	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116866	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116868	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116869	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116870	0.93[EUR][1000 genomes]
rs11116873	0.97[EUR][1000 genomes]
rs11116874	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116875	0.92[EUR][1000 genomes]
rs11116876	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116880	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116881	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116882	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116884	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116885	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116887	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11116889	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11116890	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11116892	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11116895	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11116896	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11116898	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11116899	0.97[EUR][1000 genomes]
rs11116920	0.92[EUR][1000 genomes]
rs11116932	0.92[EUR][1000 genomes]
rs11116950	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs12227817	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12228112	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12230759	1.00[EUR][1000 genomes]
rs12230925	1.00[EUR][1000 genomes]
rs12231153	0.92[EUR][1000 genomes]
rs12231156	0.92[EUR][1000 genomes]
rs12231815	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12231930	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1398443	1.00[EUR][1000 genomes]
rs1512728	1.00[EUR][1000 genomes]
rs1512729	1.00[EUR][1000 genomes]
rs2203199	1.00[EUR][1000 genomes]
rs2405253	0.92[EUR][1000 genomes]
rs3884595	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55897040	1.00[EUR][1000 genomes]
rs55897445	0.92[EUR][1000 genomes]
rs56251198	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57059247	1.00[EUR][1000 genomes]
rs57527697	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57608040	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs57741929	0.92[EUR][1000 genomes]
rs58809157	0.92[EUR][1000 genomes]
rs59312748	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59403304	0.97[EUR][1000 genomes]
rs59712244	1.00[EUR][1000 genomes]
rs59788521	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59846618	0.97[EUR][1000 genomes]
rs60202749	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60552633	1.00[EUR][1000 genomes]
rs60683378	0.97[EUR][1000 genomes]
rs7137284	0.97[EUR][1000 genomes]
rs7297228	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7300664	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7304792	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7308668	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73367235	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73367237	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73367241	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73367246	0.97[EUR][1000 genomes]
rs73367251	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73367261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73367266	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73367273	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73368476	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73368490	0.97[EUR][1000 genomes]
rs73368493	0.97[EUR][1000 genomes]
rs73370465	0.92[EUR][1000 genomes]
rs74112007	1.00[EUR][1000 genomes]
rs74112008	1.00[EUR][1000 genomes]
rs74112009	1.00[EUR][1000 genomes]
rs74112028	1.00[EUR][1000 genomes]
rs74112030	1.00[EUR][1000 genomes]
rs74112031	1.00[EUR][1000 genomes]
rs74112083	1.00[EUR][1000 genomes]
rs74112086	0.97[EUR][1000 genomes]
rs74112222	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74112251	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74112259	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74112289	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7484736	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7485150	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7485219	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7486870	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7486887	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.97[EUR][1000 genomes]
rs7486989	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7489034	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952944	1.00[EUR][1000 genomes]
rs7958126	1.00[EUR][1000 genomes]
rs7961629	1.00[EUR][1000 genomes]
rs7963815	0.89[EUR][1000 genomes]
rs7966534	0.95[EUR][1000 genomes]
rs7972133	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7976869	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9783419	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9783510	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943733	0.92[EUR][1000 genomes]
rs9943736	0.92[EUR][1000 genomes]
rs9943770	0.92[EUR][1000 genomes]
rs9943779	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2751125	chr12:85884858-86098240	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1043253	chr12:85888151-86125364	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv795	chr12:85893392-85938122	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1041556	chr12:85897131-85934317	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1037938	chr12:85902517-86045125	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv2761758	chr12:85906092-86045137	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv455679	chr12:85908396-86024749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv559664	chr12:85908396-86024749	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv559665	chr12:85908396-86070692	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv2751126	chr12:85912432-86061403	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv520857	chr12:85919312-85927862	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85920800-85922400	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:85921400-85924200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:85921400-85925200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:85921600-85926200	Enhancers	Fetal Intestine Small	intestine
5	chr12:85921800-85922600	Enhancers	GM12878-XiMat	blood
6	chr12:85922200-85922400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links