Variant report

Variant	rs9784092
Chromosome Location	chr2:47741889-47741890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:47740431..47742098-chr2:47747533..47749204,2	MCF-7	breast:
2	chr2:47738717..47741955-chr2:47744813..47746664,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10175959	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10175972	0.86[ASN][1000 genomes]
rs10188090	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10197011	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10206575	0.85[ASN][1000 genomes]
rs10206782	0.85[ASN][1000 genomes]
rs10209369	0.85[AMR][1000 genomes]
rs10495945	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11684661	0.84[AMR][1000 genomes]
rs11684737	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11694689	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11886591	0.83[AMR][1000 genomes]
rs11896864	0.83[AMR][1000 genomes]
rs11901645	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12712994	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12991125	0.85[ASN][1000 genomes]
rs13031342	0.86[ASN][1000 genomes]
rs2278139	0.82[ASN][1000 genomes]
rs2303424	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771281	0.81[EUR][1000 genomes]
rs3821227	0.81[EUR][1000 genomes]
rs4550716	0.84[AMR][1000 genomes]
rs4583514	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6718364	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6720555	0.84[AMR][1000 genomes]
rs6744097	0.81[ASN][1000 genomes]
rs6746426	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6754473	0.81[EUR][1000 genomes]
rs6759990	0.84[AMR][1000 genomes]
rs7585174	0.86[ASN][1000 genomes]
rs7596629	0.80[EUR][1000 genomes]
rs7599880	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7601062	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7606984	0.83[ASN][1000 genomes]
rs876936	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876937	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879722	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv998314	chr2:47720420-47959168	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv817599	chr2:47738456-47961099	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47732600-47747800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:47734000-47747000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:47734000-47747600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:47736800-47742800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:47736800-47747400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:47736800-47747400	Weak transcription	Thymus	Thymus
7	chr2:47737000-47747200	Weak transcription	GM12878-XiMat	blood
8	chr2:47737200-47743400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:47737200-47744400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:47737200-47744800	Weak transcription	Fetal Thymus	thymus
11	chr2:47738200-47742800	Weak transcription	Fetal Brain Male	brain
12	chr2:47738200-47744800	Weak transcription	Ovary	ovary
13	chr2:47738400-47743600	Weak transcription	Fetal Brain Female	brain
14	chr2:47738400-47747200	Weak transcription	Brain Germinal Matrix	brain
15	chr2:47739200-47747600	Weak transcription	Pancreas	Pancrea
16	chr2:47740000-47743000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:47740000-47747200	Weak transcription	Spleen	Spleen
18	chr2:47740200-47745200	Weak transcription	Dnd41	blood
19	chr2:47740400-47746600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr2:47740800-47742600	Enhancers	Brain Angular Gyrus	brain
21	chr2:47741200-47747400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:47741400-47743000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:47741400-47743400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:47741400-47744200	Enhancers	Brain Hippocampus Middle	brain
25	chr2:47741400-47744800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:47741600-47742800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:47741600-47743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:47741600-47743000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:47741600-47743400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:47741600-47747400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:47741800-47742200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:47741800-47745800	Weak transcription	Fetal Intestine Small	intestine

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