Variant report

Variant	rs9784630
Chromosome Location	chr5:154259918-154259919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154259693..154261538-chr5:154283511..154285617,2	K562	blood:
2	chr5:154257361..154260035-chr5:154261444..154263229,2	MCF-7	breast:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:
4	chr5:154252871..154255251-chr5:154258261..154260137,2	K562	blood:
5	chr5:154032204..154034670-chr5:154258482..154261349,2	MCF-7	breast:
6	chr5:154257449..154260221-chr5:154262171..154263946,4	K562	blood:

rs_ID	r²[population]
rs11167701	1.00[ASW][hapmap];0.86[LWK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs35562111	1.00[AMR][1000 genomes]
rs6866448	1.00[AMR][1000 genomes]
rs7704534	1.00[AMR][1000 genomes]
rs7715619	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs7721346	1.00[AMR][1000 genomes]
rs7722219	1.00[AMR][1000 genomes]
rs7731757	0.86[LWK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7733953	0.91[YRI][hapmap];1.00[AMR][1000 genomes]

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154239600-154263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
3	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
4	chr5:154252200-154264200	Weak transcription	Fetal Heart	heart
5	chr5:154255600-154261000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:154255600-154266000	Weak transcription	NHLF	lung
7	chr5:154255800-154264200	Weak transcription	Fetal Brain Male	brain
8	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
10	chr5:154256000-154260800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:154256200-154261000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr5:154256800-154260000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr5:154256800-154260000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr5:154256800-154260800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:154256800-154265000	Weak transcription	K562	blood
21	chr5:154257000-154260000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:154257600-154260000	ZNF genes & repeats	Liver	Liver
25	chr5:154257600-154260000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr5:154257800-154260000	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr5:154258000-154260000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr5:154258200-154260000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:154258600-154260000	Strong transcription	Primary T cells from cord blood	blood
31	chr5:154258600-154264000	Weak transcription	Psoas Muscle	Psoas
32	chr5:154258600-154264600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr5:154258800-154264000	Weak transcription	A549	lung
34	chr5:154258800-154264600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:154258800-154264800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr5:154258800-154264800	Weak transcription	NHDF-Ad	bronchial
37	chr5:154258800-154265000	Weak transcription	Brain Angular Gyrus	brain
38	chr5:154258800-154265600	Weak transcription	Gastric	stomach
39	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr5:154259000-154260200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:154259000-154260600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:154259000-154260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:154259000-154261800	Weak transcription	Adipose Nuclei	Adipose
44	chr5:154259000-154262000	Weak transcription	Left Ventricle	heart
45	chr5:154259000-154262800	Weak transcription	Fetal Brain Female	brain
46	chr5:154259000-154264000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr5:154259000-154264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:154259000-154264000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:154259000-154264000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:154259000-154264000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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