Variant report

Variant	rs9785017
Chromosome Location	chr7:150854637-150854638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2069458	1.00[AMR][1000 genomes]
rs3918201	1.00[AMR][1000 genomes]
rs3918216	1.00[AMR][1000 genomes]
rs3918218	1.00[AMR][1000 genomes]
rs41483644	1.00[AMR][1000 genomes]
rs73472583	1.00[AMR][1000 genomes]
rs73472587	1.00[AMR][1000 genomes]
rs73474700	1.00[AMR][1000 genomes]
rs73478620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150841400-150862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:150842400-150859200	Weak transcription	Left Ventricle	heart
3	chr7:150844800-150856400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:150851600-150858000	Weak transcription	Psoas Muscle	Psoas
5	chr7:150854400-150855000	Enhancers	A549	lung
6	chr7:150854400-150855200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:150854600-150854800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:150854600-150854800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr7:150854600-150854800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:150854600-150854800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr7:150854600-150854800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr7:150854600-150854800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
13	chr7:150854600-150854800	Bivalent Enhancer	K562	blood
14	chr7:150854600-150855400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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