Variant report

Variant	rs9786077
Chromosome Location	chrY:15815443-15815444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrY:15815133-15816694	H1-hESC	embryonic stem cell:	n/a	n/a
2	TAF7	chrY:15815350-15816451	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chrY:15815399-15815857	A549	lung:	n/a	n/a
4	CTCF	chrY:15815420-15815570	GM12874	blood:	n/a	n/a
5	POLR2A	chrY:15815398-15815861	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chrY:15815365-15815934	H1-neurons	neurons:	n/a	n/a
7	TAF1	chrY:15815395-15815952	H1-neurons	neurons:	n/a	n/a
8	POLR2A	chrY:15815392-15815827	A549	lung:	n/a	n/a
9	POLR2A	chrY:15815330-15816041	HUVEC	blood vessel:	n/a	n/a
10	MAX	chrY:15815410-15815794	A549	lung:	n/a	n/a
11	POLR2A	chrY:15815391-15816376	GM12891	blood:	n/a	n/a
12	POLR2A	chrY:15815396-15816580	HUVEC	blood vessel:	n/a	n/a
13	TCF12	chrY:15815310-15815807	A549	lung:	n/a	n/a
14	POLR2A	chrY:15815264-15816412	GM12891	blood:	n/a	n/a
15	POU2F2	chrY:15815442-15816013	GM12891	blood:	n/a	n/a
16	CTCF	chrY:15815420-15815570	A549	lung:	n/a	n/a
17	MAX	chrY:15815382-15815934	HepG2	liver:	n/a	n/a
18	CTCF	chrY:15815420-15815570	GM12864	blood:	n/a	n/a
19	MAX	chrY:15815326-15816124	A549	lung:	n/a	n/a
20	RAD21	chrY:15815386-15815853	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chrY:15815403-15816524	PBDE	blood:	n/a	n/a
22	E2F6	chrY:15815384-15815918	H1-hESC	embryonic stem cell:	n/a	n/a
23	FOXA2	chrY:15815153-15815902	A549	lung:	n/a	n/a
24	CREB1	chrY:15815418-15815745	A549	lung:	n/a	n/a
25	POLR2A	chrY:15815387-15816423	GM12891	blood:	n/a	n/a
26	CTCF	chrY:15815440-15815590	AG04449	skin:	n/a	n/a
27	POLR2A	chrY:15815387-15816500	H1-hESC	embryonic stem cell:	n/a	n/a
28	YY1	chrY:15815398-15816571	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chrY:15815406-15815886	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chrY:15815384-15816503	H1-hESC	embryonic stem cell:	n/a	n/a
31	TAF1	chrY:15815280-15815887	H1-hESC	embryonic stem cell:	n/a	n/a
32	E2F6	chrY:15815399-15816005	A549	lung:	n/a	n/a
33	REST	chrY:15815338-15817564	H1-neurons	neurons:	n/a	n/a
34	POLR2A	chrY:15815392-15815954	A549	lung:	n/a	n/a
35	TAF1	chrY:15815355-15816581	H1-hESC	embryonic stem cell:	n/a	n/a
36	YY1	chrY:15815406-15816418	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chrY:15815385-15815914	A549	lung:	n/a	n/a
38	MAX	chrY:15815340-15816033	A549	lung:	n/a	n/a
39	TAF1	chrY:15815423-15815876	GM12891	blood:	n/a	n/a
40	TAF1	chrY:15815338-15815936	A549	lung:	n/a	n/a
41	POLR2A	chrY:15815300-15816769	H1-hESC	embryonic stem cell:	n/a	n/a
42	YY1	chrY:15815437-15816267	A549	lung:	n/a	n/a
43	REST	chrY:15815382-15815802	H1-neurons	neurons:	n/a	n/a
44	POLR2A	chrY:15815383-15815913	H1-neurons	neurons:	n/a	n/a
45	POLR2A	chrY:15815401-15815987	GM12891	blood:	n/a	n/a
46	FOXA2	chrY:15815201-15815922	A549	lung:	n/a	n/a
47	POLR2A	chrY:15815391-15815825	A549	lung:	n/a	n/a
48	MAX	chrY:15815381-15815880	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
TMSB4Y	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534170	chrY:15744612-16023278	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:15814200-15817200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrY:15814200-15817800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chrY:15814400-15817200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chrY:15814400-15817400	Active TSS	Fetal Intestine Large	intestine
5	chrY:15814400-15817800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chrY:15814400-15818000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrY:15814400-15818000	Active TSS	Brain Germinal Matrix	brain
8	chrY:15814600-15817400	Active TSS	Fetal Intestine Small	intestine
9	chrY:15814600-15817800	Active TSS	H1 Cell Line	embryonic stem cell
10	chrY:15814800-15816600	Active TSS	Gastric	stomach
11	chrY:15814800-15816600	Active TSS	HUVEC	blood vessel
12	chrY:15814800-15816800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chrY:15814800-15816800	Active TSS	Duodenum Mucosa	Duodenum
14	chrY:15814800-15817000	Active TSS	Liver	Liver
15	chrY:15814800-15817000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chrY:15814800-15817200	Active TSS	Right Ventricle	heart
17	chrY:15814800-15817400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chrY:15814800-15818200	Active TSS	Brain Hippocampus Middle	brain
19	chrY:15815000-15817400	Active TSS	Aorta	Aorta
20	chrY:15815000-15817800	Active TSS	A549	lung
21	chrY:15815400-15815600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chrY:15815400-15815600	Active TSS	NH-A	brain
23	chrY:15815400-15815800	Transcr. at gene 5' and 3'	Right Atrium	heart
24	chrY:15815400-15816000	Active TSS	Primary hematopoietic stem cells	blood
25	chrY:15815400-15816200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chrY:15815400-15816400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chrY:15815400-15816400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chrY:15815400-15816400	Active TSS	HepG2	liver
29	chrY:15815400-15816600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chrY:15815400-15816600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chrY:15815400-15816600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chrY:15815400-15816600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chrY:15815400-15816600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chrY:15815400-15816600	Active TSS	Placenta Amnion	Placenta Amnion
35	chrY:15815400-15816600	Active TSS	Small Intestine	intestine
36	chrY:15815400-15816600	Active TSS	NHLF	lung
37	chrY:15815400-15816800	Active TSS	Primary neutrophils fromperipheralblood	blood
38	chrY:15815400-15816800	Active TSS	Primary B cells from peripheral blood	blood
39	chrY:15815400-15816800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chrY:15815400-15816800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chrY:15815400-15816800	Active TSS	Esophagus	oesophagus
42	chrY:15815400-15816800	Active TSS	Left Ventricle	heart
43	chrY:15815400-15816800	Active TSS	Psoas Muscle	Psoas
44	chrY:15815400-15816800	Active TSS	HSMM	muscle
45	chrY:15815400-15817000	Active TSS	Primary monocytes fromperipheralblood	blood
46	chrY:15815400-15817000	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chrY:15815400-15817000	Active TSS	Thymus	Thymus
48	chrY:15815400-15817200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chrY:15815400-15817200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chrY:15815400-15817200	Active TSS	Primary B cells from cord blood	blood

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