Variant report

Variant	rs9788653
Chromosome Location	chr15:62129101-62129102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10519144	0.84[AMR][1000 genomes]
rs12232347	0.84[AMR][1000 genomes]
rs12439027	0.86[AMR][1000 genomes]
rs12441358	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12441436	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12441791	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442506	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12442569	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12591667	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12594218	0.82[AMR][1000 genomes]
rs12594396	0.84[AMR][1000 genomes]
rs1364809	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1559673	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17238110	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17238127	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17238189	0.84[AMR][1000 genomes]
rs17238210	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs17303831	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17303866	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17303873	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2113935	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs34516157	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36143406	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3784635	0.86[EUR][1000 genomes]
rs3809516	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4774426	0.84[AMR][1000 genomes]
rs4775446	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775452	0.84[AMR][1000 genomes]
rs7177538	0.84[AMR][1000 genomes]
rs72747848	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72747849	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72747852	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72747853	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72747855	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747856	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747868	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72747869	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72747870	0.87[ASN][1000 genomes]
rs72747874	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747879	0.84[AMR][1000 genomes]
rs72747895	0.84[AMR][1000 genomes]
rs72747901	0.86[AMR][1000 genomes]
rs72749703	0.84[AMR][1000 genomes]
rs72749733	0.86[EUR][1000 genomes]
rs8030161	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs8033347	0.82[AMR][1000 genomes]
rs963023	0.84[AMR][1000 genomes]
rs9788739	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62128200-62130400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:62128200-62132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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