Variant report

Variant	rs9790906
Chromosome Location	chr5:164389085-164389086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10066727	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13173293	0.86[ASN][1000 genomes]
rs35406848	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35411130	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36057000	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131412	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4530780	0.91[ASN][1000 genomes]
rs4582301	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6420121	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6859274	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7448333	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7448803	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883088	chr5:164170049-164391457	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164388400-164389200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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