Variant report

Variant	rs9791019
Chromosome Location	chr5:52844751-52844752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10065003	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10078892	0.91[ASN][1000 genomes]
rs10471866	0.84[ASN][1000 genomes]
rs10940322	0.89[ASN][1000 genomes]
rs10940323	0.92[ASN][1000 genomes]
rs12514280	0.88[ASN][1000 genomes]
rs12657948	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13177321	0.92[ASN][1000 genomes]
rs13179304	0.84[ASN][1000 genomes]
rs1532162	0.92[ASN][1000 genomes]
rs16881474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs187658	0.84[ASN][1000 genomes]
rs256081	0.83[ASN][1000 genomes]
rs256082	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs256086	0.81[ASN][1000 genomes]
rs256109	0.84[ASN][1000 genomes]
rs256111	0.84[ASN][1000 genomes]
rs2607483	0.83[ASN][1000 genomes]
rs2607485	0.83[ASN][1000 genomes]
rs2637002	0.83[ASN][1000 genomes]
rs34071992	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs365358	0.81[ASN][1000 genomes]
rs4147732	0.92[ASN][1000 genomes]
rs4147734	0.91[ASN][1000 genomes]
rs425085	0.84[ASN][1000 genomes]
rs444848	0.84[ASN][1000 genomes]
rs454735	0.81[ASN][1000 genomes]
rs4865547	0.92[ASN][1000 genomes]
rs4865548	0.92[ASN][1000 genomes]
rs524289	0.84[ASN][1000 genomes]
rs58889983	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7711180	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7717681	0.84[ASN][1000 genomes]
rs7736747	0.92[ASN][1000 genomes]
rs889290	0.83[EUR][1000 genomes]
rs918625	0.92[ASN][1000 genomes]
rs923610	0.91[ASN][1000 genomes]
rs9790964	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9791152	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52839600-52845600	Weak transcription	K562	blood
2	chr5:52842600-52849000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:52842800-52845000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:52843000-52845600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:52843400-52848600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:52843600-52845000	Enhancers	Stomach Mucosa	stomach
7	chr5:52843600-52848600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:52843600-52850600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:52843800-52844800	Weak transcription	Fetal Intestine Small	intestine
10	chr5:52844600-52844800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr5:52844600-52845000	Enhancers	Fetal Intestine Large	intestine

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