Variant report

Variant	rs9791922
Chromosome Location	chr7:127559133-127559134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127557505..127559222-chr7:127570595..127572494,2	K562	blood:
2	chr7:127554877..127556921-chr7:127556939..127559555,2	K562	blood:
3	chr7:127558856..127562059-chr7:127564451..127566410,3	MCF-7	breast:
4	chr7:127557772..127560077-chr7:127562045..127563596,2	K562	blood:
5	chr7:127548651..127551238-chr7:127556319..127560627,3	K562	blood:
6	chr7:127553227..127554781-chr7:127558910..127560585,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1024910	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10954164	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11768841	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11772303	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1193331	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1193333	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1193335	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs124756	0.80[AMR][1000 genomes]
rs12539411	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12540484	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12667197	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12668077	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12672945	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12673293	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419967	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16871926	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151229	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17151377	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151470	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17732677	0.83[ASN][1000 genomes]
rs2058457	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2241291	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2402871	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2543477	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs322821	0.80[AMR][1000 genomes]
rs322822	0.80[AMR][1000 genomes]
rs322824	0.80[AMR][1000 genomes]
rs322825	0.80[AMR][1000 genomes]
rs322829	0.80[AMR][1000 genomes]
rs322830	0.80[AMR][1000 genomes]
rs322837	0.80[AMR][1000 genomes]
rs3757754	0.80[AMR][1000 genomes]
rs3757759	0.80[AMR][1000 genomes]
rs3757760	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3757763	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3757771	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3757778	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3757780	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3779522	0.80[AMR][1000 genomes]
rs3779523	0.80[AMR][1000 genomes]
rs3779527	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808056	0.80[EUR][1000 genomes]
rs3808078	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808082	0.82[ASN][1000 genomes]
rs3808086	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824003	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4728079	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4731377	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4731386	0.82[ASN][1000 genomes]
rs56185520	0.81[ASN][1000 genomes]
rs58106688	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59140894	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62481385	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62481416	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62481419	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62481443	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62481447	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62481450	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6467155	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467156	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67338333	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6969233	0.80[AMR][1000 genomes]
rs712718	0.81[AMR][1000 genomes]
rs712719	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs765971	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7789322	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs882694	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127528800-127569200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:127529200-127569400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:127532200-127569200	Weak transcription	Hela-S3	cervix
4	chr7:127532400-127569200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:127541000-127569200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:127541200-127569400	Weak transcription	Left Ventricle	heart
7	chr7:127544800-127560600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:127545000-127569200	Weak transcription	Thymus	Thymus
9	chr7:127545000-127569200	Weak transcription	HSMMtube	muscle
10	chr7:127545800-127569200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:127546000-127566800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:127546200-127560400	Weak transcription	Pancreas	Pancrea
13	chr7:127546200-127569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:127546400-127567400	Weak transcription	NHDF-Ad	bronchial
15	chr7:127546400-127569200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:127546400-127569200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:127546400-127569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:127546400-127569200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:127546400-127569200	Weak transcription	Placenta	Placenta
20	chr7:127546400-127569200	Weak transcription	Dnd41	blood
21	chr7:127546800-127569000	Weak transcription	Fetal Thymus	thymus
22	chr7:127546800-127569200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:127546800-127569200	Weak transcription	Aorta	Aorta
24	chr7:127546800-127569200	Weak transcription	Lung	lung
25	chr7:127547400-127567000	Weak transcription	Liver	Liver
26	chr7:127547800-127569200	Weak transcription	Primary T cells from cord blood	blood
27	chr7:127547800-127569600	Weak transcription	A549	lung
28	chr7:127548000-127567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:127548400-127560400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:127548400-127560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:127548400-127562800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:127549200-127561000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:127549200-127567600	Weak transcription	NH-A	brain
34	chr7:127549800-127567400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr7:127550000-127568000	Weak transcription	NHEK	skin
36	chr7:127551200-127569400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:127551400-127566800	Weak transcription	Small Intestine	intestine
38	chr7:127551400-127569200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr7:127551400-127569200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:127551600-127569200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:127552400-127569200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:127553400-127567400	Weak transcription	Primary B cells from cord blood	blood
43	chr7:127553400-127569200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:127553600-127560400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:127553600-127567000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:127553600-127567600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:127553800-127562000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:127553800-127569400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:127554000-127567000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:127554800-127567200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links