Variant report

Variant	rs979528
Chromosome Location	chr10:45504394-45504395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45495644..45497300-chr10:45502585..45504465,2	MCF-7	breast:
2	chr10:45428166..45428769-chr10:45503894..45504435,2	MCF-7	breast:
3	chr10:45470718..45473140-chr10:45500575..45504463,3	K562	blood:

Variant related genes	Relation type
ENSG00000165512	Chromatin interaction
ENSG00000165511	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10751365	0.84[AFR][1000 genomes]
rs10793581	0.84[AFR][1000 genomes]
rs10900160	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11471	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1332621	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1343628	0.82[AFR][1000 genomes]
rs1578875	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740090	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862870	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3902673	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3908729	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4027069	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4097763	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4456217	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6593456	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7896524	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7898523	0.82[AFR][1000 genomes]
rs7904261	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7905526	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7918824	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9971272	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs979528	RASSF4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45497000-45511000	Weak transcription	Gastric	stomach
2	chr10:45499400-45511000	Weak transcription	Pancreas	Pancrea
3	chr10:45500400-45510400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:45501000-45505200	Weak transcription	Small Intestine	intestine
5	chr10:45503800-45504400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:45503800-45504400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:45503800-45504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:45503800-45504400	Enhancers	Adipose Nuclei	Adipose
9	chr10:45503800-45504600	Enhancers	HUVEC	blood vessel
10	chr10:45504000-45504400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:45504000-45504400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:45504000-45504400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:45504000-45504400	Enhancers	Liver	Liver
14	chr10:45504000-45504400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:45504000-45504400	Flanking Active TSS	Fetal Kidney	kidney
16	chr10:45504000-45504400	Enhancers	NH-A	brain
17	chr10:45504200-45504400	Active TSS	Stomach Smooth Muscle	stomach
18	chr10:45504200-45504600	Weak transcription	K562	blood

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