Variant report

Variant	rs9795469
Chromosome Location	chr11:65713207-65713208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65686026..65690385-chr11:65711034..65716101,7	MCF-7	breast:
2	chr11:65625517..65628088-chr11:65710841..65713644,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SART1-1	chr11:65713162-65713337	ENSG00000175513
2	lnc-SART1-1	chr11:65713115-65713293	ENSG00000175513

Variant related genes	Relation type
ENSG00000172732	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000175573	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2231889	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2298447	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs604630	1.00[CHB][hapmap]
rs606830	1.00[CHB][hapmap]
rs9326363	1.00[AFR][1000 genomes]
rs9988860	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65709200-65726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:65709400-65717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65710400-65713400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:65712400-65716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:65712600-65713800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:65712800-65713400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:65712800-65713600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:65712800-65713600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:65712800-65713800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:65712800-65713800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:65712800-65713800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:65712800-65713800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr11:65712800-65713800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:65712800-65713800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:65712800-65713800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr11:65712800-65713800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:65712800-65715400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:65713000-65713400	Active TSS	H9 Cell Line	embryonic stem cell
20	chr11:65713000-65713400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:65713000-65713400	Flanking Active TSS	HepG2	liver
22	chr11:65713000-65713600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr11:65713000-65713800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:65713000-65713800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:65713200-65713600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:65713200-65713800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
27	chr11:65713200-65713800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:65713200-65715400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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