Variant report

Variant	rs9797242
Chromosome Location	chr17:20974874-20974875
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11867665	0.82[ASN][1000 genomes]
rs11871072	0.81[ASN][1000 genomes]
rs72840147	0.80[ASN][1000 genomes]
rs872789	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9797242	RP11-344E13.3	cis	Whole Blood	GTEx
rs9797242	RP11-344E13.3	cis	Muscle Skeletal	GTEx
rs9797242	RP11-344E13.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20970200-20978600	Weak transcription	HSMMtube	muscle
2	chr17:20973400-20976000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:20973600-20975400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr17:20973600-20975800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:20973600-20975800	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:20973600-20977600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:20974200-20978400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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