Variant report

Variant	rs9804397
Chromosome Location	chr10:21850171-21850172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21847924..21850525-chr10:22012351..22015305,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11498365	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv947765	chr10:21845377-21874408	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21824600-21930400	Weak transcription	Gastric	stomach
3	chr10:21824800-21852200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21824800-21852200	Strong transcription	Fetal Intestine Small	intestine
5	chr10:21824800-21860200	Weak transcription	Psoas Muscle	Psoas
6	chr10:21825200-21850600	Strong transcription	Fetal Stomach	stomach
7	chr10:21825200-21854800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:21825600-21857800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:21825800-21856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:21826200-21850600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:21827800-21850800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:21828000-21851200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:21828000-21856600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:21832000-21856400	Weak transcription	Colonic Mucosa	Colon
15	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
16	chr10:21832800-21856200	Weak transcription	Pancreas	Pancrea
17	chr10:21833400-21851200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:21833400-21856200	Weak transcription	Small Intestine	intestine
19	chr10:21833400-21856400	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:21837600-21850400	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:21838200-21851400	Strong transcription	Placenta	Placenta
22	chr10:21839000-21864200	Weak transcription	Fetal Heart	heart
23	chr10:21839200-21859000	Weak transcription	Right Atrium	heart
24	chr10:21839400-21851200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:21839400-21856200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:21839400-21878200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:21839600-21851000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:21839600-21855000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:21839600-21860600	Weak transcription	Brain Substantia Nigra	brain
30	chr10:21839800-21880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:21840000-21877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:21841200-21861600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
34	chr10:21841400-21859800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:21841600-21870000	Weak transcription	Right Ventricle	heart
36	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
37	chr10:21842400-21853600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:21842600-21858600	Weak transcription	Spleen	Spleen
39	chr10:21844000-21856200	Weak transcription	NHLF	lung
40	chr10:21844000-21862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:21844600-21854000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
43	chr10:21844800-21850200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:21844800-21852600	Strong transcription	HepG2	liver
45	chr10:21845400-21850200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr10:21845800-21850200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:21845800-21862000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:21846000-21850600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:21846600-21860800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:21846800-21861400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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