Variant report

Variant	rs9804409
Chromosome Location	chr10:6206363-6206364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6185303..6188661-chr10:6204606..6207335,3	MCF-7	breast:
2	chr10:6205792..6207491-chr10:6220254..6222481,2	MCF-7	breast:
3	chr10:6183365..6192251-chr10:6204124..6207252,15	MCF-7	breast:
4	chr10:6154386..6156653-chr10:6205525..6207284,3	MCF-7	breast:
5	chr10:6191671..6194517-chr10:6205867..6207550,2	K562	blood:
6	chr10:6204888..6206866-chr10:6235315..6238580,3	MCF-7	breast:
7	chr10:6185340..6191102-chr10:6203416..6207424,7	K562	blood:
8	chr10:6204469..6207295-chr10:6338789..6342054,3	MCF-7	breast:
9	chr10:6202871..6212786-chr10:6240811..6248696,29	MCF-7	breast:
10	chr10:6203753..6210403-chr10:6228380..6234446,7	MCF-7	breast:
11	chr10:6204481..6206489-chr10:6404115..6406824,2	MCF-7	breast:
12	chr10:6180971..6185195-chr10:6203384..6207419,4	MCF-7	breast:
13	chr10:6203235..6207397-chr10:6442888..6446681,6	MCF-7	breast:
14	chr10:6192754..6196744-chr10:6204087..6207333,8	MCF-7	breast:
15	chr10:6128980..6130903-chr10:6206068..6209123,3	K562	blood:
16	chr10:6185650..6194925-chr10:6200700..6207657,20	K562	blood:
17	chr10:6204009..6209137-chr10:6241452..6247054,19	MCF-7	breast:
18	chr10:6129793..6132520-chr10:6203974..6206960,3	MCF-7	breast:
19	chr10:6188903..6191152-chr10:6204778..6206877,2	MCF-7	breast:
20	chr10:6129123..6132271-chr10:6205782..6209123,3	K562	blood:
21	chr10:6205192..6207297-chr10:6278573..6280926,3	MCF-7	breast:
22	chr10:6202105..6203646-chr10:6203962..6206668,2	MCF-7	breast:
23	chr10:6205467..6207907-chr10:6231128..6234046,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000263628	Chromatin interaction
ENSG00000201581	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10159543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74114526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:6204800-6206600	Active TSS	Rectal Smooth Muscle	rectum
3	chr10:6204800-6207000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:6205000-6206400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:6205000-6206400	Active TSS	Fetal Brain Female	brain
6	chr10:6205000-6206800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:6205000-6206800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr10:6205200-6206400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:6205200-6206400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr10:6205200-6206400	Active TSS	Colon Smooth Muscle	Colon
11	chr10:6205200-6206400	Active TSS	Fetal Brain Male	brain
12	chr10:6205200-6206400	Active TSS	NHEK	skin
13	chr10:6205200-6206600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:6205200-6206600	Active TSS	Fetal Kidney	kidney
15	chr10:6205200-6206800	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr10:6205200-6206800	Active TSS	Right Atrium	heart
17	chr10:6205200-6207200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:6205200-6207200	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr10:6205400-6206400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:6205400-6206400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:6205400-6206400	Active TSS	Brain Angular Gyrus	brain
22	chr10:6205400-6206400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:6205400-6206400	Active TSS	Brain Substantia Nigra	brain
24	chr10:6205400-6206400	Active TSS	Duodenum Mucosa	Duodenum
25	chr10:6205400-6206400	Active TSS	Left Ventricle	heart
26	chr10:6205400-6206400	Active TSS	Small Intestine	intestine
27	chr10:6205400-6206400	Active TSS	Stomach Smooth Muscle	stomach
28	chr10:6205400-6206600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr10:6205400-6206600	Active TSS	H9 Cell Line	embryonic stem cell
30	chr10:6205400-6206600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:6205400-6206600	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr10:6205400-6206600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:6205400-6206600	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr10:6205400-6206600	Active TSS	Ovary	ovary
35	chr10:6205400-6206600	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr10:6205400-6206800	Active TSS	Aorta	Aorta
37	chr10:6205400-6206800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr10:6205400-6206800	Active TSS	Fetal Stomach	stomach
39	chr10:6205400-6206800	Active TSS	Gastric	stomach
40	chr10:6205400-6206800	Active TSS	Pancreas	Pancrea
41	chr10:6205400-6206800	Active TSS	Psoas Muscle	Psoas
42	chr10:6205400-6206800	Active TSS	A549	lung
43	chr10:6205400-6206800	Active TSS	GM12878-XiMat	blood
44	chr10:6205400-6206800	Active TSS	HSMM	muscle
45	chr10:6205400-6206800	Active TSS	K562	blood
46	chr10:6205400-6206800	Active TSS	NHLF	lung
47	chr10:6205400-6207000	Active TSS	Lung	lung
48	chr10:6205400-6207000	Active TSS	Hela-S3	cervix
49	chr10:6205600-6206400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:6205600-6206400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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