Variant report

Variant	rs9805002
Chromosome Location	chr12:121058370-121058371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3850512	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121057400-121060200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:121057400-121063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:121057800-121059200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:121058000-121059000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:121058000-121059000	Enhancers	HMEC	breast
6	chr12:121058000-121059200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
7	chr12:121058000-121059200	Enhancers	NHEK	skin
8	chr12:121058200-121058800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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