Variant report

Variant	rs9805004
Chromosome Location	chr12:121565870-121565871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr12:121565225-121566105	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121564281..121567226-chr12:121569639..121571152,2	MCF-7	breast:
2	chr12:121565478..121567856-chr12:121646838..121650208,3	K562	blood:
3	chr12:121563121..121566575-chr12:121568260..121572155,4	K562	blood:
4	chr12:121565146..121566829-chr12:121666395..121668307,2	MCF-7	breast:
5	chr12:121561171..121566774-chr12:121646455..121649214,5	MCF-7	breast:

No data

Variant related genes	Relation type
P2RX7	TF binding region
ENSG00000135124	Chromatin interaction
ENSG00000089041	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11065444	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065468	0.88[CHB][hapmap]
rs1180000	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1180001	0.95[ASN][1000 genomes]
rs1180002	0.95[ASN][1000 genomes]
rs1180003	0.95[ASN][1000 genomes]
rs1180004	0.95[ASN][1000 genomes]
rs1180006	0.90[ASN][1000 genomes]
rs1180007	0.88[ASN][1000 genomes]
rs1180010	0.97[ASN][1000 genomes]
rs1182936	0.95[ASN][1000 genomes]
rs1185890	0.95[ASN][1000 genomes]
rs1186228	0.92[ASN][1000 genomes]
rs12297280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310981	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12312648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817169	1.00[MEX][hapmap]
rs12819523	1.00[MEX][hapmap]
rs12819930	1.00[MEX][hapmap]
rs12821512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1618331	0.97[ASN][1000 genomes]
rs1626124	0.97[ASN][1000 genomes]
rs1653598	0.88[CHB][hapmap]
rs1653601	0.88[CHB][hapmap]
rs1653602	0.88[CHB][hapmap]
rs1653610	0.88[CHB][hapmap]
rs1653614	0.88[CHB][hapmap]
rs1653618	0.88[CHB][hapmap]
rs1718119	0.88[CHB][hapmap]
rs1718133	0.88[CHB][hapmap]
rs1718135	0.88[CHB][hapmap]
rs1718136	0.88[CHB][hapmap]
rs17434640	1.00[MEX][hapmap]
rs1794892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1794895	0.95[ASN][1000 genomes]
rs1794896	0.95[ASN][1000 genomes]
rs1794899	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1794900	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1794902	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1796412	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1796413	0.82[ASN][1000 genomes]
rs1796416	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1796417	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1796421	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1796423	0.95[ASN][1000 genomes]
rs208278	1.00[ASN][1000 genomes]
rs208279	1.00[ASN][1000 genomes]
rs208282	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs208283	1.00[ASN][1000 genomes]
rs208298	0.88[CHB][hapmap]
rs208305	0.88[CHB][hapmap]
rs208306	0.88[CHB][hapmap]
rs208307	0.88[CHB][hapmap]
rs208308	0.88[CHB][hapmap]
rs208311	0.84[CHB][hapmap]
rs2263270	0.95[ASN][1000 genomes]
rs2461473	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2464842	0.85[ASN][1000 genomes]
rs2516210	0.95[ASN][1000 genomes]
rs2567988	0.88[CHB][hapmap]
rs2567989	0.88[CHB][hapmap]
rs2567991	0.88[CHB][hapmap]
rs2686384	0.88[CHB][hapmap]
rs2708091	0.95[ASN][1000 genomes]
rs2857592	0.88[CHB][hapmap]
rs35694882	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504677	0.88[CHB][hapmap]
rs523581	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552299	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57263663	0.90[AFR][1000 genomes]
rs589384	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs621255	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs637649	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs648316	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs651221	0.98[ASN][1000 genomes]
rs651606	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651673	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs652121	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71454678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891781	0.88[CHB][hapmap]
rs9971689	0.95[ASN][1000 genomes]
rs9971789	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9971861	0.95[ASN][1000 genomes]
rs9971870	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9971935	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9971953	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv832531	chr12:121440495-121604232	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv430537	chr12:121487632-121579955	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1054878	chr12:121519880-121761800	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv455729	chr12:121525591-121761800	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv560455	chr12:121525591-121761800	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv899563	chr12:121543011-121600529	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1050519	chr12:121552964-121756420	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121561600-121566200	Weak transcription	Thymus	Thymus
2	chr12:121562200-121566000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:121562200-121566000	Weak transcription	K562	blood
4	chr12:121562200-121566600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:121562400-121566800	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:121562400-121570600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:121562600-121566000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:121562600-121566400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:121562600-121566600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr12:121562600-121566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr12:121562600-121566800	Weak transcription	A549	lung
12	chr12:121562800-121566000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr12:121562800-121566000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:121562800-121566000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr12:121562800-121566000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr12:121562800-121566000	Weak transcription	HUVEC	blood vessel
17	chr12:121562800-121566200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:121562800-121566800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:121562800-121566800	Weak transcription	Fetal Heart	heart
20	chr12:121562800-121569200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:121562800-121570400	Weak transcription	Ovary	ovary
22	chr12:121563000-121566800	Weak transcription	NHEK	skin
23	chr12:121563000-121569400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:121563600-121566600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:121564000-121566000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr12:121564000-121566600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr12:121564000-121566600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:121564000-121567400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr12:121564000-121568600	Enhancers	Liver	Liver
30	chr12:121564200-121566000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr12:121564200-121570600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:121564400-121566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:121565000-121566600	Enhancers	Primary B cells from peripheral blood	blood
34	chr12:121565000-121567600	Enhancers	Right Atrium	heart
35	chr12:121565000-121567600	Enhancers	Stomach Mucosa	stomach
36	chr12:121565200-121569600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:121565400-121566800	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr12:121565400-121568400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr12:121565600-121567800	Enhancers	Spleen	Spleen
40	chr12:121565800-121566000	Enhancers	Gastric	stomach
41	chr12:121565800-121566000	Flanking Active TSS	HepG2	liver
42	chr12:121565800-121566200	Weak transcription	Primary T cells from cord blood	blood
43	chr12:121565800-121566600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr12:121565800-121566600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr12:121565800-121566600	Enhancers	GM12878-XiMat	blood
46	chr12:121565800-121566800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr12:121565800-121566800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr12:121565800-121566800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr12:121565800-121567000	Enhancers	Primary B cells from cord blood	blood
50	chr12:121565800-121567000	Enhancers	Rectal Mucosa Donor 31	rectum

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