Variant report

Variant	rs9805875
Chromosome Location	chr2:120380791-120380792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10148823	0.83[AMR][1000 genomes]
rs1951737	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2273944	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2984817	0.81[AMR][1000 genomes]
rs4048603	0.97[ASN][1000 genomes]
rs56861678	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58329055	0.81[AMR][1000 genomes]
rs59297309	0.81[ASN][1000 genomes]
rs6573487	0.81[AMR][1000 genomes]
rs6573488	0.81[AMR][1000 genomes]
rs73598764	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73600715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600730	0.81[AMR][1000 genomes]
rs8011460	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8022613	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874963	chr2:120247486-120903167	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv431613	chr2:120321770-120474770	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:120372800-120394800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:120374200-120394400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:120375000-120396600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:120375400-120383200	Weak transcription	Pancreas	Pancrea
5	chr2:120375800-120387600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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