Variant report

Variant	rs9806186
Chromosome Location	chr15:50033762-50033763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12324122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497868	1.00[AMR][1000 genomes]
rs58646635	1.00[AMR][1000 genomes]
rs73396925	1.00[AMR][1000 genomes]
rs73396928	1.00[AMR][1000 genomes]
rs768828	1.00[AFR][1000 genomes]
rs8025169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50024400-50033800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:50025000-50033800	Weak transcription	K562	blood
3	chr15:50025200-50033800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:50030800-50033800	Weak transcription	HSMMtube	muscle
5	chr15:50033600-50034200	Enhancers	Hela-S3	cervix
6	chr15:50033600-50034600	Enhancers	Colonic Mucosa	Colon
7	chr15:50033600-50035200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr15:50033600-50035200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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