Variant report

Variant	rs9806467
Chromosome Location	chr15:51178276-51178277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50977395..50978757-chr15:51177504..51178749,6	MCF-7	breast:
2	chr15:50977345..50980340-chr15:51175475..51179077,6	MCF-7	breast:
3	chr15:50967518..50968536-chr15:51177697..51178744,10	MCF-7	breast:
4	chr15:51056698..51057448-chr15:51178160..51178767,2	MCF-7	breast:
5	chr15:51176736..51179086-chr17:57924082..57925795,2	MCF-7	breast:
6	chr15:51176893..51178567-chr3:64222246..64223916,2	MCF-7	breast:
7	chr15:51169182..51171979-chr15:51176658..51178721,2	K562	blood:
8	chr15:51056324..51059354-chr15:51172484..51179110,10	MCF-7	breast:
9	chr15:51176297..51178705-chr15:51190226..51192825,2	MCF-7	breast:
10	chr15:50914267..50915255-chr15:51177811..51178741,3	MCF-7	breast:
11	chr15:51165879..51166445-chr15:51177762..51178689,2	K562	blood:
12	chr15:51176979..51180496-chr15:51199774..51202562,4	MCF-7	breast:
13	chr15:51164794..51166513-chr15:51178274..51180679,2	MCF-7	breast:
14	chr15:51056877..51058773-chr15:51177963..51180955,2	K562	blood:
15	chr15:50900703..50903174-chr15:51177027..51179659,2	K562	blood:
16	chr15:50977263..50981217-chr15:51174338..51179159,10	MCF-7	breast:
17	chr15:51056574..51058163-chr15:51177043..51179683,2	MCF-7	breast:
18	chr15:51178079..51179990-chr15:51193017..51195574,2	MCF-7	breast:
19	chr15:51147815..51150812-chr15:51176681..51178652,2	MCF-7	breast:
20	chr15:51169111..51169804-chr15:51177818..51178332,2	MCF-7	breast:
21	chr15:51176719..51180099-chr15:51197525..51202342,6	K562	blood:
22	chr15:51175847..51180099-chr15:51197260..51201772,6	K562	blood:
23	chr15:51177730..51178688-chr15:51199736..51201603,8	MCF-7	breast:
24	chr15:50967882..50968417-chr15:51177766..51178597,2	K562	blood:
25	chr11:66175626..66176497-chr15:51177798..51178394,2	MCF-7	breast:
26	chr15:51168728..51169620-chr15:51177649..51178652,4	K562	blood:
27	chr15:51177788..51178311-chr19:47652896..47653445,2	MCF-7	breast:
28	chr15:51171742..51173328-chr15:51175943..51178564,2	MCF-7	breast:
29	chr15:50967423..50968891-chr15:51177782..51178702,3	MCF-7	breast:
30	chr15:50646054..50648194-chr15:51177186..51179087,2	MCF-7	breast:
31	chr15:51177817..51178676-chr20:52278485..52279434,2	MCF-7	breast:
32	chr15:51177679..51178691-chr15:51200248..51201218,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP4E1-3	chr15:51178028-51178462	NONHSAT042442

No data

Variant related genes	Relation type
ENSG00000092439	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000243027	Chromatin interaction
ENSG00000081014	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10083672	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12324608	1.00[AMR][1000 genomes]
rs12324743	0.91[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12385953	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16963985	0.80[YRI][hapmap]
rs2118786	1.00[AMR][1000 genomes]
rs3848131	1.00[AMR][1000 genomes]
rs9944192	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
15	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
16	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
17	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51169200-51180000	Weak transcription	Right Atrium	heart
2	chr15:51176000-51178600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr15:51176000-51179400	Enhancers	HUVEC	blood vessel
4	chr15:51176800-51178800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:51177200-51178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:51177200-51183000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:51177400-51178400	Enhancers	Primary B cells from peripheral blood	blood
8	chr15:51177400-51178400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr15:51177400-51178400	Enhancers	Fetal Muscle Leg	muscle
10	chr15:51177400-51178400	Flanking Active TSS	Hela-S3	cervix
11	chr15:51177400-51178600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:51177400-51179600	Enhancers	NHEK	skin
13	chr15:51177400-51180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:51177400-51181600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:51177600-51178400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:51177600-51178400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr15:51177600-51178400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:51177600-51178400	Active TSS	A549	lung
19	chr15:51177800-51178400	Enhancers	Colonic Mucosa	Colon
20	chr15:51177800-51178400	Enhancers	Placenta	Placenta
21	chr15:51177800-51181400	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:51177800-51199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:51177800-51199600	Weak transcription	Ovary	ovary
24	chr15:51178000-51178400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:51178000-51178400	Flanking Active TSS	Liver	Liver
26	chr15:51178000-51178400	Enhancers	NHLF	lung
27	chr15:51178000-51178600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:51178200-51178400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:51178200-51178400	Enhancers	Right Ventricle	heart
30	chr15:51178200-51178400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr15:51178200-51179800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:51178200-51180400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:51178200-51180600	Weak transcription	HMEC	breast
34	chr15:51178200-51180800	Enhancers	Osteobl	bone
35	chr15:51178200-51181600	Enhancers	GM12878-XiMat	blood

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