Variant report

Variant	rs9806483
Chromosome Location	chr15:92422578-92422579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92422506..92425337-chr15:92432239..92434576,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11854172	0.88[EUR][1000 genomes]
rs11857939	0.89[EUR][1000 genomes]
rs12905016	0.94[EUR][1000 genomes]
rs4583214	0.91[AFR][1000 genomes]
rs4619375	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61664916	0.93[EUR][1000 genomes]
rs7165254	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92409600-92430800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
4	chr15:92411200-92430600	Weak transcription	Colonic Mucosa	Colon
5	chr15:92411200-92431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:92411600-92430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:92411600-92430600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:92412000-92425200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:92412000-92425800	Weak transcription	Lung	lung
10	chr15:92412000-92426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:92414800-92424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:92414800-92424200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:92414800-92424200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:92414800-92425200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:92414800-92429600	Weak transcription	Ovary	ovary
16	chr15:92415000-92424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:92415000-92424200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:92415000-92432600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:92416200-92428400	Weak transcription	Esophagus	oesophagus
20	chr15:92416400-92428000	Weak transcription	Fetal Stomach	stomach
21	chr15:92416600-92424000	Weak transcription	Brain Anterior Caudate	brain
22	chr15:92416600-92431000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:92416800-92430600	Weak transcription	HMEC	breast
24	chr15:92416800-92431000	Weak transcription	NHEK	skin
25	chr15:92418000-92435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:92418200-92425200	Enhancers	Fetal Heart	heart
27	chr15:92418400-92424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:92418400-92428200	Weak transcription	Spleen	Spleen
29	chr15:92418400-92430400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:92418400-92435800	Weak transcription	Primary T cells from cord blood	blood
31	chr15:92418600-92423000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:92418600-92423600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:92418600-92424200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:92418800-92424200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:92419000-92424200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:92419000-92424400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:92419000-92426200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr15:92419000-92428200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:92419400-92423600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:92419600-92428600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:92419600-92430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:92419800-92424600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:92420200-92424400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:92420200-92424400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:92420200-92429200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr15:92420800-92426600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr15:92421200-92424400	Enhancers	Fetal Brain Male	brain
48	chr15:92421400-92426400	Enhancers	Brain Substantia Nigra	brain
49	chr15:92421400-92430400	Enhancers	Brain Hippocampus Middle	brain
50	chr15:92421600-92426400	Weak transcription	Right Atrium	heart

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