Variant report

Variant	rs9806729
Chromosome Location	chr15:39698667-39698668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39698653..39701088-chr15:39877017..39879720,2	MCF-7	breast:
2	chr15:39696668..39698687-chr15:39702884..39705384,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16969042	0.85[AMR][1000 genomes]
rs16969047	0.85[AMR][1000 genomes]
rs73393446	0.85[AMR][1000 genomes]
rs73393448	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39695200-39699000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:39695400-39698800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:39695400-39699600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:39695400-39700400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:39695400-39700400	Enhancers	NHDF-Ad	bronchial
6	chr15:39695600-39698800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:39695600-39699000	Enhancers	HMEC	breast
8	chr15:39695600-39700000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:39695600-39700000	Enhancers	NHLF	lung
10	chr15:39695800-39699000	Enhancers	NHEK	skin
11	chr15:39697000-39699600	Weak transcription	Fetal Stomach	stomach
12	chr15:39697600-39698800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:39697600-39699600	Weak transcription	Left Ventricle	heart
14	chr15:39697600-39703000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:39697600-39705000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:39697800-39699000	Weak transcription	Fetal Heart	heart
17	chr15:39698000-39699000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:39698000-39699600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:39698000-39703800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:39698000-39703800	Weak transcription	Osteobl	bone
21	chr15:39698400-39699400	Enhancers	GM12878-XiMat	blood
22	chr15:39698600-39702800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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