Variant report

Variant	rs9808584
Chromosome Location	chr20:22906603-22906604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6113865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs944469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22902400-22907000	Enhancers	HSMMtube	muscle
2	chr20:22902600-22906800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:22902800-22906800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:22903000-22909200	Enhancers	K562	blood
5	chr20:22903200-22908200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:22905400-22907000	Weak transcription	Right Atrium	heart
7	chr20:22905600-22906800	Enhancers	HSMM	muscle
8	chr20:22905800-22912200	Weak transcription	A549	lung
9	chr20:22906000-22908200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:22906600-22918200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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