Variant report

Variant	rs9808806
Chromosome Location	chr21:16043928-16043929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16027302..16029189-chr21:16043696..16046360,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11701328	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1350630	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1977014	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1977015	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2125751	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2822819	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2822822	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs421894	0.83[ASN][1000 genomes]
rs456716	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs458104	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs459315	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs460280	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs460643	0.89[ASN][1000 genomes]
rs462339	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs464381	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs464687	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs465674	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs466464	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs467055	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7275267	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7277131	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7280842	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs989877	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs989878	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9977944	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9980813	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1246198	chr21:16043914-16043948	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16042400-16044400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16043600-16045000	Weak transcription	K562	blood

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