Variant report

Variant	rs9809563
Chromosome Location	chr3:143353928-143353929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13089318	0.88[AFR][1000 genomes]
rs1534161	0.92[AFR][1000 genomes]
rs2030817	0.90[AFR][1000 genomes]
rs35277850	0.81[AMR][1000 genomes]
rs4425252	0.92[AFR][1000 genomes]
rs6779887	0.84[AFR][1000 genomes]
rs7632272	0.94[AFR][1000 genomes]
rs9811274	0.91[CEU][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811842	0.88[AFR][1000 genomes]
rs9846132	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143337400-143354200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:143339200-143355200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:143346400-143363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143346600-143355600	Weak transcription	Primary T cells from cord blood	blood
6	chr3:143348200-143355400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:143352000-143355600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:143352800-143354400	Enhancers	Duodenum Mucosa	Duodenum
10	chr3:143353200-143354400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:143353600-143354600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr3:143353800-143354000	Enhancers	Small Intestine	intestine
13	chr3:143353800-143354000	Enhancers	Dnd41	blood
14	chr3:143353800-143354200	ZNF genes & repeats	Esophagus	oesophagus
15	chr3:143353800-143354200	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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