Variant report

Variant	rs9809762
Chromosome Location	chr3:116326159-116326160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12487799	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6762787	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs938913	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829686	chr3:116325622-116494541	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116325600-116326400	Enhancers	Brain Substantia Nigra	brain
2	chr3:116325600-116326800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:116325800-116326400	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:116326000-116326600	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr3:116326000-116326600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:116326000-116326600	Active TSS	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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