Variant report

Variant	rs9810780
Chromosome Location	chr3:100228511-100228512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12639465	0.83[ASN][1000 genomes]
rs56402168	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56779007	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60272820	0.86[ASN][1000 genomes]
rs62276556	0.85[ASN][1000 genomes]
rs62276559	0.86[ASN][1000 genomes]
rs6441300	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66791174	0.85[ASN][1000 genomes]
rs67600559	0.86[ASN][1000 genomes]
rs6798264	0.86[ASN][1000 genomes]
rs7650523	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7653196	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9813069	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9810780	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL
rs9810780	TMEM45A	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:100225400-100236800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:100225800-100235000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:100227200-100230400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:100227200-100239400	Weak transcription	Ovary	ovary
6	chr3:100227400-100239400	Weak transcription	Aorta	Aorta
7	chr3:100227400-100239400	Weak transcription	Fetal Stomach	stomach
8	chr3:100227600-100236200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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