Variant report

Variant	rs981086
Chromosome Location	chr6:87809741-87809742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2011192	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7759783	0.87[ASN][1000 genomes]
rs9344673	0.83[ASN][1000 genomes]
rs9344674	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs981086	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL
rs981086	SLC35A1	cis	multi-tissue	Pritchard
rs981086	C6orf162	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87806000-87810600	Weak transcription	Placenta	Placenta
3	chr6:87807000-87812600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:87808600-87810000	Enhancers	HepG2	liver
5	chr6:87808800-87809800	Enhancers	Fetal Intestine Small	intestine
6	chr6:87808800-87809800	Enhancers	Hela-S3	cervix
7	chr6:87808800-87810200	Enhancers	Liver	Liver
8	chr6:87809000-87814200	Enhancers	Fetal Heart	heart
9	chr6:87809400-87810000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:87809400-87814000	Weak transcription	GM12878-XiMat	blood
11	chr6:87809600-87811800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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