Variant report

Variant	rs9810893
Chromosome Location	chr3:133613913-133613914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr3:133613880-133614057	K562	blood:	n/a	chr3:133613968-133613976
2	POLR2A	chr3:133613181-133613978	H1-neurons	neurons:	n/a	n/a
3	MAX	chr3:133613171-133613967	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:133613263-133614012	H1-neurons	neurons:	n/a	n/a
5	REST	chr3:133613335-133615585	H1-neurons	neurons:	n/a	chr3:133614555-133614575 chr3:133614565-133614578 chr3:133613846-133613859 chr3:133614803-133614813 chr3:133614562-133614575 chr3:133613933-133613946 chr3:133613535-133613553 chr3:133615377-133615386 chr3:133614622-133614635
6	E2F6	chr3:133613824-133613950	K562	blood:	n/a	n/a
7	MAX	chr3:133613414-133613997	ECC-1	luminal epithelium:	n/a	n/a
8	SIN3A	chr3:133613028-133613934	H1-hESC	embryonic stem cell:	n/a	chr3:133613849-133613862
9	ZBTB7A	chr3:133613278-133615238	ECC-1	luminal epithelium:	n/a	chr3:133613968-133613976
10	TCF12	chr3:133613022-133614043	ECC-1	luminal epithelium:	n/a	chr3:133613122-133613132
11	CTCF	chr3:133613843-133613928	LNCaP	prostate:	n/a	n/a
12	ZBTB7A	chr3:133613106-133615161	ECC-1	luminal epithelium:	n/a	chr3:133613968-133613976
13	MAX	chr3:133613104-133613955	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr3:133613235-133614059	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
RAB6B	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs940899	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876687	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133610200-133614000	Enhancers	Fetal Heart	heart
2	chr3:133612600-133614000	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr3:133612600-133615200	Active TSS	Brain Anterior Caudate	brain
4	chr3:133612600-133615600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:133612800-133614200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr3:133612800-133615200	Active TSS	Brain Hippocampus Middle	brain
7	chr3:133613000-133614800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr3:133613000-133615200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:133613000-133615400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr3:133613200-133614000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:133613200-133614000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:133613200-133614200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:133613200-133614400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr3:133613200-133614800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr3:133613200-133614800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
16	chr3:133613200-133615000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:133613200-133615200	Active TSS	Brain Angular Gyrus	brain
18	chr3:133613200-133615400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr3:133613200-133615400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr3:133613200-133615600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr3:133613200-133615600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr3:133613400-133614000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:133613400-133614000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:133613400-133614000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
25	chr3:133613400-133614000	Flanking Active TSS	Pancreas	Pancrea
26	chr3:133613400-133614200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr3:133613400-133614200	Enhancers	Lung	lung
28	chr3:133613400-133614800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr3:133613400-133615200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr3:133613400-133615200	Active TSS	Psoas Muscle	Psoas
31	chr3:133613400-133615400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:133613400-133615400	Active TSS	Colon Smooth Muscle	Colon
33	chr3:133613400-133615400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
34	chr3:133613400-133615400	Active TSS	Fetal Kidney	kidney
35	chr3:133613600-133614000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:133613600-133614000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:133613600-133614000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:133613600-133614000	Flanking Active TSS	Ovary	ovary
39	chr3:133613600-133614000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
40	chr3:133613600-133614200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr3:133613600-133614200	Enhancers	Liver	Liver
42	chr3:133613600-133614200	Bivalent Enhancer	HMEC	breast
43	chr3:133613600-133614400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr3:133613600-133614400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr3:133613600-133614600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:133613600-133614600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
47	chr3:133613600-133614600	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr3:133613600-133614800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr3:133613600-133614800	Bivalent/Poised TSS	Stomach Mucosa	stomach
50	chr3:133613600-133615000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links