Variant report

Variant	rs9811006
Chromosome Location	chr3:34254466-34254467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34254296..34256628-chr3:34259423..34261115,2	K562	blood:
2	chr3:34244429..34246745-chr3:34254432..34256118,2	K562	blood:

Variant related genes	Relation type
ENSG00000236452	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11129591	0.95[ASN][1000 genomes]
rs11129592	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714393	0.91[ASN][1000 genomes]
rs2336119	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297130	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678460	0.90[ASN][1000 genomes]
rs4678662	0.95[ASN][1000 genomes]
rs7652379	0.95[ASN][1000 genomes]
rs9810690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828512	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866762	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34244000-34255000	Weak transcription	Right Atrium	heart
2	chr3:34252600-34255400	Enhancers	HUVEC	blood vessel
3	chr3:34253200-34255200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:34253400-34255200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:34253400-34255400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:34253400-34257200	Enhancers	Fetal Intestine Small	intestine
7	chr3:34253600-34254600	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr3:34253600-34255000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:34253600-34255400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:34253600-34255600	Enhancers	Fetal Intestine Large	intestine
11	chr3:34253800-34254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:34253800-34255000	Weak transcription	Brain Angular Gyrus	brain
13	chr3:34254000-34254800	Enhancers	Adipose Nuclei	Adipose
14	chr3:34254000-34255000	Weak transcription	Aorta	Aorta
15	chr3:34254000-34257800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:34254000-34258400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:34254200-34255200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:34254200-34255200	Weak transcription	Stomach Mucosa	stomach
19	chr3:34254200-34257800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:34254400-34255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:34254400-34255600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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