Variant report

Variant	rs9811066
Chromosome Location	chr3:142652059-142652060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142650379..142653024-chr3:142719705..142721620,2	K562	blood:
2	chr3:142647321..142650179-chr3:142650476..142652282,2	K562	blood:
3	chr3:142651551..142654466-chr3:142715710..142718013,2	K562	blood:
4	chr3:142650379..142653269-chr3:142718625..142721620,3	K562	blood:
5	chr3:142649831..142652993-chr3:142654764..142656664,3	K562	blood:
6	chr3:142651289..142652804-chr3:142658584..142660364,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-U2SURP-3	chr3:142652047-142652110	XLOC_002845
2	lnc-U2SURP-3	chr3:142652047-142652110	XLOC_002845
3	lnc-U2SURP-3	chr3:142652046-142654646	NONHSAT092490
4	lnc-U2SURP-3	chr3:142652047-142652110	NONHSAT092491
5	lnc-U2SURP-3	chr3:142652047-142652110	NONHSAT092492
6	lnc-U2SURP-3	chr3:142652047-142652110	NONHSAT092494
7	lnc-U2SURP-3	chr3:142652047-142652110	NONHSAT092493
8	lnc-U2SURP-3	chr3:142652047-142652110	NONHSAT092495

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4683437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683438	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683439	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683710	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683714	0.88[EUR][1000 genomes]
rs4683715	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6770560	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650847	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9653945	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9821138	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832727	0.85[EUR][1000 genomes]
rs9838306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv4040	chr3:142649146-142675752	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142650200-142654400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:142650400-142653400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:142651800-142654000	Weak transcription	Liver	Liver
4	chr3:142652000-142652400	Enhancers	K562	blood
5	chr3:142652000-142652600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:142652000-142652800	Bivalent Enhancer	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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