Variant report

Variant	rs9811416
Chromosome Location	chr3:136251582-136251583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1070230	0.84[ASN][1000 genomes]
rs1070232	0.93[ASN][1000 genomes]
rs12630999	0.82[ASN][1000 genomes]
rs12635723	0.84[ASN][1000 genomes]
rs4678433	0.90[ASN][1000 genomes]
rs58994059	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61789645	0.93[AMR][1000 genomes]
rs61789646	1.00[AMR][1000 genomes]
rs61789652	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6439646	0.88[ASN][1000 genomes]
rs7621025	0.87[ASN][1000 genomes]
rs833752	0.95[ASN][1000 genomes]
rs9289511	0.97[ASN][1000 genomes]
rs9809427	0.93[AMR][1000 genomes]
rs9820485	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9835523	0.93[AMR][1000 genomes]
rs9845396	1.00[AMR][1000 genomes]
rs9851986	0.93[AMR][1000 genomes]
rs9856769	0.87[AMR][1000 genomes]
rs9869720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877527	chr3:136182053-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv877528	chr3:136209550-136295283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv591850	chr3:136209550-136300732	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
4	chr3:136191400-136268000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:136192400-136252400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:136195400-136278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:136213000-136252200	Weak transcription	Left Ventricle	heart
9	chr3:136213000-136326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:136220600-136266200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:136222400-136266200	Weak transcription	HSMM	muscle
12	chr3:136232000-136263600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:136232400-136255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:136246600-136286200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:136247200-136252400	Weak transcription	Thymus	Thymus
16	chr3:136247200-136319800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:136247200-136334800	Weak transcription	Aorta	Aorta
18	chr3:136247400-136270600	Weak transcription	Fetal Thymus	thymus
19	chr3:136247800-136255200	Weak transcription	Fetal Stomach	stomach
20	chr3:136247800-136261600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr3:136248200-136349200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:136248800-136251600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:136249800-136252400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:136249800-136254200	Weak transcription	Lung	lung
25	chr3:136250000-136257000	Weak transcription	Fetal Intestine Small	intestine
26	chr3:136250800-136251800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:136250800-136252600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:136251000-136251600	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr3:136251000-136251600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:136251000-136251600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:136251000-136251600	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr3:136251000-136251600	ZNF genes & repeats	Liver	Liver
33	chr3:136251000-136251600	ZNF genes & repeats	Fetal Lung	lung
34	chr3:136251000-136251600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr3:136251000-136251800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
36	chr3:136251000-136251800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
37	chr3:136251000-136251800	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr3:136251000-136252800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr3:136251000-136252800	ZNF genes & repeats	Dnd41	blood
40	chr3:136251000-136254400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:136251200-136251600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
42	chr3:136251200-136251600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr3:136251200-136251800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
44	chr3:136251200-136252000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:136251200-136252200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:136251200-136252600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:136251200-136252800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
48	chr3:136251200-136253200	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr3:136251400-136319000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links