Variant report

Variant	rs9811829
Chromosome Location	chr3:118675439-118675440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1158699	0.85[AFR][1000 genomes]
rs12492855	0.83[AFR][1000 genomes]
rs16829179	0.86[AFR][1000 genomes]
rs28440859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28484956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573387	0.81[AFR][1000 genomes]
rs28592657	0.86[AFR][1000 genomes]
rs28655404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56728928	0.85[AFR][1000 genomes]
rs58284747	0.83[AFR][1000 genomes]
rs6772441	0.82[AFR][1000 genomes]
rs6779428	0.81[AFR][1000 genomes]
rs6795721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6807838	0.86[AFR][1000 genomes]
rs71325355	1.00[ASN][1000 genomes]
rs72966895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968605	0.86[AFR][1000 genomes]
rs72968613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9289118	0.80[AFR][1000 genomes]
rs9809027	0.83[AMR][1000 genomes]
rs9821022	0.80[AFR][1000 genomes]
rs9821458	0.83[AFR][1000 genomes]
rs9828087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9828870	0.86[AFR][1000 genomes]
rs9833229	0.86[AFR][1000 genomes]
rs9835052	0.80[AFR][1000 genomes]
rs9836642	0.83[AFR][1000 genomes]
rs9848498	0.80[AFR][1000 genomes]
rs9849421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855713	0.86[AFR][1000 genomes]
rs9860140	0.85[AFR][1000 genomes]
rs9873807	0.83[AFR][1000 genomes]
rs9874208	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118662000-118679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:118662000-118679800	Weak transcription	Ovary	ovary
3	chr3:118664400-118676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:118666200-118677800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:118669200-118677600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:118670000-118675600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:118672800-118677000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:118673000-118676000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:118673000-118676200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:118673000-118676800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:118673000-118676800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:118673000-118677200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:118673200-118676600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:118673200-118677200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:118674200-118675600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:118674200-118676000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:118674600-118676200	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:118674800-118676400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:118675200-118675600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr3:118675200-118676000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr3:118675200-118676200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr3:118675400-118676200	Enhancers	Brain Substantia Nigra	brain
23	chr3:118675400-118677200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:118675400-118677200	Enhancers	Brain Hippocampus Middle	brain
25	chr3:118675400-118680800	Enhancers	Brain Anterior Caudate	brain

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