Variant report

Variant	rs9812862
Chromosome Location	chr3:155838637-155838638
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13318658	0.85[AFR][1000 genomes]
rs9823385	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes]
rs9869978	1.00[ASW][hapmap];0.91[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155838200-155838800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr3:155838200-155838800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:155838200-155839000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:155838400-155838800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:155838400-155838800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:155838400-155838800	Enhancers	Pancreas	Pancrea
7	chr3:155838400-155839000	Active TSS	Fetal Muscle Leg	muscle
8	chr3:155838400-155839200	Active TSS	Adipose Nuclei	Adipose
9	chr3:155838600-155838800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr3:155838600-155838800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:155838600-155838800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:155838600-155838800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:155838600-155838800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
14	chr3:155838600-155838800	Flanking Active TSS	Left Ventricle	heart
15	chr3:155838600-155839000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
16	chr3:155838600-155839000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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