Variant report

Variant	rs9813441
Chromosome Location	chr3:20086414-20086415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:20082249..20087148-chr3:20090873..20095169,4	K562	blood:
2	chr3:20083177..20086049-chr3:20086105..20087867,2	MCF-7	breast:
3	chr3:20081096..20083250-chr3:20083860..20086560,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114166	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1915919	0.87[AFR][1000 genomes]
rs1915922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805894	0.92[ASN][1000 genomes]
rs6806287	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652967	0.88[AMR][1000 genomes]
rs9819915	0.84[AFR][1000 genomes]
rs9840832	0.92[ASN][1000 genomes]
rs9849842	0.92[ASN][1000 genomes]
rs9852074	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1833139	chr3:19579860-20121349	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1826030	chr3:19972766-20170581	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv1825988	chr3:19976375-20102773	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv997486	chr3:20006702-20113989	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1829542	chr3:20009231-20384627	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv834627	chr3:20068115-20227975	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20083000-20098600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:20083200-20088600	Weak transcription	Ovary	ovary
3	chr3:20083400-20086600	Enhancers	Placenta	Placenta
4	chr3:20083400-20089000	Weak transcription	Fetal Brain Male	brain
5	chr3:20083800-20089200	Enhancers	Left Ventricle	heart
6	chr3:20083800-20092000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:20084000-20089400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:20084000-20089400	Weak transcription	Brain Germinal Matrix	brain
9	chr3:20084000-20091200	Enhancers	Brain Substantia Nigra	brain
10	chr3:20084200-20089400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:20085000-20087800	Weak transcription	Esophagus	oesophagus
12	chr3:20085000-20092400	Weak transcription	Gastric	stomach
13	chr3:20085000-20095800	Weak transcription	Spleen	Spleen
14	chr3:20085200-20088200	Weak transcription	Fetal Stomach	stomach
15	chr3:20085200-20088600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:20085200-20089400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:20085200-20089800	Weak transcription	HSMMtube	muscle
18	chr3:20085200-20092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:20085200-20092800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:20085200-20098200	Weak transcription	Fetal Kidney	kidney
21	chr3:20085400-20087000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:20085400-20087200	Weak transcription	Psoas Muscle	Psoas
23	chr3:20085400-20087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:20085400-20088200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:20085400-20088600	Weak transcription	Osteobl	bone
26	chr3:20085400-20089000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:20085400-20089000	Weak transcription	Fetal Lung	lung
28	chr3:20085400-20089000	Weak transcription	NHDF-Ad	bronchial
29	chr3:20085400-20089400	Weak transcription	NHLF	lung
30	chr3:20085400-20089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:20085400-20090200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:20085400-20095800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:20085400-20096000	Weak transcription	Pancreas	Pancrea
34	chr3:20085600-20087000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:20085600-20088800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:20085600-20088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:20085600-20088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:20085600-20089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:20085600-20089000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:20085600-20089000	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:20085600-20089200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:20085600-20089800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr3:20085600-20090400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:20085600-20095400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:20085800-20086600	Enhancers	Primary T cells from cord blood	blood
46	chr3:20085800-20086600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:20085800-20087000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:20085800-20087200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:20085800-20087200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:20085800-20087400	Weak transcription	Brain Angular Gyrus	brain

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