Variant report

Variant	rs9813689
Chromosome Location	chr3:133514822-133514823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133514253..133517392-chr3:133517467..133520462,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12490148	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12595	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13079426	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525889	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1534165	0.85[ASN][1000 genomes]
rs1830083	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830084	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34252038	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34805309	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35332919	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811647	0.81[EUR][1000 genomes]
rs3811658	0.80[AMR][1000 genomes]
rs4854760	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4854761	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4854762	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6439439	0.80[EUR][1000 genomes]
rs6762719	0.80[EUR][1000 genomes]
rs6794945	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217233	0.85[ASN][1000 genomes]
rs7638018	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8177245	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8177247	0.80[EUR][1000 genomes]
rs8177248	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8177252	0.80[EUR][1000 genomes]
rs8177253	0.80[EUR][1000 genomes]
rs8177256	0.80[EUR][1000 genomes]
rs8177259	0.80[EUR][1000 genomes]
rs8177261	0.80[EUR][1000 genomes]
rs8177262	0.80[EUR][1000 genomes]
rs8177271	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8177272	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8177295	0.83[AMR][1000 genomes]
rs9843728	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9871148	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882812	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv4018	chr3:133485867-133530668	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133513600-133516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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