Variant report

Variant	rs981458
Chromosome Location	chr4:75009581-75009582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10938107	0.92[EUR][1000 genomes]
rs11725704	0.82[EUR][1000 genomes]
rs11733208	0.82[EUR][1000 genomes]
rs12642974	0.92[EUR][1000 genomes]
rs13124617	0.82[EUR][1000 genomes]
rs1371794	0.81[EUR][1000 genomes]
rs1371798	0.90[EUR][1000 genomes]
rs1371799	0.90[EUR][1000 genomes]
rs1837559	0.82[EUR][1000 genomes]
rs1866755	0.90[EUR][1000 genomes]
rs3806792	0.90[EUR][1000 genomes]
rs4121652	0.91[EUR][1000 genomes]
rs491641	0.93[ASN][1000 genomes]
rs518867	0.81[EUR][1000 genomes]
rs546829	0.81[EUR][1000 genomes]
rs549280	0.89[EUR][1000 genomes]
rs72652928	0.82[EUR][1000 genomes]
rs72652934	0.90[EUR][1000 genomes]
rs7667376	0.90[EUR][1000 genomes]
rs7686861	0.92[EUR][1000 genomes]
rs882638	0.82[EUR][1000 genomes]
rs9131	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75004400-75010600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:75004400-75013800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:75006000-75013200	Weak transcription	HMEC	breast
4	chr4:75007000-75009800	Strong transcription	NHEK	skin
5	chr4:75009200-75013200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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