Variant report

Variant	rs981471
Chromosome Location	chr14:77629017-77629018
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12883963	0.87[CEU][hapmap]
rs12891631	0.86[CEU][hapmap]
rs158105	0.94[EUR][1000 genomes]
rs166966	0.94[EUR][1000 genomes]
rs17105413	1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs1861420	0.87[CEU][hapmap]
rs2021856	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2080384	0.88[CEU][hapmap]
rs2661828	0.84[CEU][hapmap]
rs4021320	0.87[CEU][hapmap]
rs4899641	0.88[CEU][hapmap]
rs55820801	0.94[EUR][1000 genomes]
rs7148469	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7154702	0.88[CEU][hapmap]
rs72725303	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8015721	0.80[AMR][1000 genomes]
rs8016243	0.86[CEU][hapmap]
rs8022863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888064	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv976845	chr14:77621865-77649191	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77625600-77632600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:77625600-77647200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:77628800-77629200	Bivalent/Poised TSS	Hela-S3	cervix
4	chr14:77629000-77629200	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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