Variant report

Variant	rs9814808
Chromosome Location	chr3:133177336-133177337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59181710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60903868	0.83[ASN][1000 genomes]
rs6782406	0.83[ASN][1000 genomes]
rs72980098	0.83[ASN][1000 genomes]
rs72982205	0.83[ASN][1000 genomes]
rs72982207	0.83[ASN][1000 genomes]
rs7623519	0.80[EUR][1000 genomes]
rs9818906	0.93[ASN][1000 genomes]
rs9865003	0.80[EUR][1000 genomes]
rs9873492	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1829199	chr3:133158065-133213047	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv877505	chr3:133167363-133235272	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133161000-133191000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:133165400-133178600	Weak transcription	Aorta	Aorta
3	chr3:133168200-133178800	Weak transcription	Fetal Kidney	kidney
4	chr3:133169400-133177400	Weak transcription	Thymus	Thymus
5	chr3:133169800-133179400	Weak transcription	GM12878-XiMat	blood
6	chr3:133172400-133178400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:133172400-133178400	Weak transcription	Stomach Mucosa	stomach
8	chr3:133173000-133178400	Weak transcription	HepG2	liver
9	chr3:133173200-133177800	Weak transcription	A549	lung
10	chr3:133173400-133178200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:133175000-133177800	Weak transcription	Esophagus	oesophagus
12	chr3:133175000-133178800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:133175000-133179600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:133175400-133178200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:133175600-133177600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:133176200-133178400	Weak transcription	Placenta	Placenta
17	chr3:133176200-133178600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:133177200-133185800	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links