Variant report

Variant	rs9814827
Chromosome Location	chr3:158002143-158002144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1070894	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1095629	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1095630	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1095633	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1095634	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11707696	0.86[ASN][1000 genomes]
rs11719388	0.88[ASN][1000 genomes]
rs1210358	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13060100	0.81[ASN][1000 genomes]
rs13072413	0.80[ASN][1000 genomes]
rs1581412	0.80[ASN][1000 genomes]
rs1589528	0.80[ASN][1000 genomes]
rs1608968	0.81[ASN][1000 genomes]
rs1610269	0.81[ASN][1000 genomes]
rs1618377	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1624094	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1724676	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1724677	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1724728	0.81[ASN][1000 genomes]
rs1729997	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729999	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1730043	0.85[ASN][1000 genomes]
rs1730054	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1730100	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2682397	0.83[ASN][1000 genomes]
rs2693528	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2693541	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4320039	0.81[ASN][1000 genomes]
rs4320040	0.81[ASN][1000 genomes]
rs4336069	0.81[ASN][1000 genomes]
rs4396839	0.81[ASN][1000 genomes]
rs4410410	0.82[ASN][1000 genomes]
rs4679823	0.80[ASN][1000 genomes]
rs57361244	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441176	0.81[ASN][1000 genomes]
rs6441177	0.81[ASN][1000 genomes]
rs6802443	0.80[ASN][1000 genomes]
rs698980	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs698986	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs698988	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs698989	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs698990	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs698991	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs699916	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699917	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699919	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs699921	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699922	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699924	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168795	0.84[ASN][1000 genomes]
rs7614091	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7617503	0.81[ASN][1000 genomes]
rs7617666	0.88[ASN][1000 genomes]
rs7621889	0.87[ASN][1000 genomes]
rs7645383	0.81[ASN][1000 genomes]
rs827090	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs827091	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs827118	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs827120	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs827121	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs827122	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs827123	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs827125	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs827136	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs827143	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs827148	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs827150	0.81[ASN][1000 genomes]
rs827151	0.83[ASN][1000 genomes]
rs827156	0.85[ASN][1000 genomes]
rs827158	0.85[ASN][1000 genomes]
rs827159	0.85[ASN][1000 genomes]
rs827161	0.85[ASN][1000 genomes]
rs827172	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs827175	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827187	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827188	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827802	0.83[ASN][1000 genomes]
rs827803	0.83[ASN][1000 genomes]
rs827804	0.83[ASN][1000 genomes]
rs827806	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs827807	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs852110	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs862351	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs864859	0.85[ASN][1000 genomes]
rs9838196	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157986200-158006600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:157986400-158040000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:157988200-158009600	Weak transcription	Pancreas	Pancrea
4	chr3:157993400-158054600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:157993800-158040600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:157998000-158023400	Weak transcription	Primary monocytes fromperipheralblood	blood

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