Variant report

Variant	rs9815549
Chromosome Location	chr3:195603652-195603653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr3:195603481-195604004	K562	blood:	n/a	n/a
2	MAX	chr3:195603429-195604059	MCF-7	breast:	n/a	chr3:195603673-195603683
3	POLR2A	chr3:195603437-195603847	K562	blood:	n/a	n/a
4	ATF3	chr3:195603565-195603856	K562	blood:	n/a	chr3:195603628-195603637
5	FOSL1	chr3:195603377-195603865	K562	blood:	n/a	chr3:195603751-195603763 chr3:195603749-195603760 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603627-195603636 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603753-195603761
6	USF2	chr3:195603605-195603930	Hela-S3	cervix:	n/a	chr3:195603661-195603677 chr3:195603829-195603845
7	E2F4	chr3:195603583-195603783	MCF10A-Er-Src	breast:	n/a	n/a
8	MAX	chr3:195603375-195604000	K562	blood:	n/a	chr3:195603673-195603683
9	HA-E2F1	chr3:195603456-195603970	MCF-7	breast:	n/a	n/a
10	RAD21	chr3:195603641-195603888	Hela-S3	cervix:	n/a	chr3:195603653-195603667
11	SMARCC1	chr3:195602803-195604082	Hela-S3	cervix:	n/a	chr3:195603753-195603762
12	TCF12	chr3:195603222-195604211	ECC-1	luminal epithelium:	n/a	chr3:195603804-195603814
13	JUND	chr3:195603593-195603920	Hela-S3	cervix:	n/a	chr3:195603751-195603763 chr3:195603749-195603760 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603627-195603636 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603753-195603761
14	JUND	chr3:195603543-195603959	K562	blood:	n/a	chr3:195603751-195603763 chr3:195603749-195603760 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603627-195603636 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603753-195603761
15	ZBTB7A	chr3:195603305-195604012	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr3:195603339-195603978	Hela-S3	cervix:	n/a	n/a
17	MXI1	chr3:195603096-195603955	Hela-S3	cervix:	n/a	n/a
18	JUN	chr3:195603587-195603934	K562	blood:	n/a	chr3:195603751-195603763 chr3:195603749-195603760 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603627-195603636 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603753-195603761
19	MYC	chr3:195603558-195603976	K562	blood:	n/a	chr3:195603673-195603683
20	RCOR1	chr3:195603595-195603837	K562	blood:	n/a	n/a
21	HMGN3	chr3:195603424-195603958	K562	blood:	n/a	chr3:195603754-195603763
22	E2F6	chr3:195603520-195603886	K562	blood:	n/a	n/a
23	MAX	chr3:195603379-195603943	ECC-1	luminal epithelium:	n/a	chr3:195603673-195603683
24	POLR2A	chr3:195603461-195603948	HCT-116	colon:	n/a	n/a
25	CCNT2	chr3:195603416-195603933	K562	blood:	n/a	n/a
26	POLR2A	chr3:195603280-195604063	K562	blood:	n/a	n/a
27	ELK1	chr3:195603375-195603915	Hela-S3	cervix:	n/a	n/a
28	FOSL2	chr3:195603505-195604012	MCF-7	breast:	n/a	chr3:195603751-195603763 chr3:195603749-195603760 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603627-195603636 chr3:195603752-195603762 chr3:195603752-195603762 chr3:195603753-195603761
29	MAX	chr3:195603194-195603934	Hela-S3	cervix:	n/a	chr3:195603673-195603683
30	HCFC1	chr3:195602331-195604823	Hela-S3	cervix:	n/a	n/a
31	MYC	chr3:195603581-195603871	K562	blood:	n/a	chr3:195603673-195603683
32	ELF1	chr3:195603532-195603773	K562	blood:	n/a	n/a
33	SMARCB1	chr3:195602688-195604540	Hela-S3	cervix:	n/a	chr3:195603753-195603762
34	POLR2A	chr3:195602467-195604049	Hela-S3	cervix:	n/a	n/a
35	RCOR1	chr3:195603518-195603880	Hela-S3	cervix:	n/a	n/a
36	NFIC	chr3:195603438-195604091	ECC-1	luminal epithelium:	n/a	n/a
37	UBTF	chr3:195603618-195603903	K562	blood:	n/a	n/a
38	MAX	chr3:195603544-195603913	K562	blood:	n/a	chr3:195603673-195603683
39	SMC3	chr3:195603355-195603918	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr3:195603360-195603932	K562	blood:	n/a	n/a
41	TCF12	chr3:195603401-195604135	ECC-1	luminal epithelium:	n/a	chr3:195603804-195603814
42	ZBTB7A	chr3:195603400-195603849	K562	blood:	n/a	n/a
43	TEAD4	chr3:195603603-195604144	K562	blood:	n/a	n/a
44	BHLHE40	chr3:195603552-195603915	K562	blood:	n/a	chr3:195603661-195603677 chr3:195603829-195603845
45	NR3C1	chr3:195603575-195603905	ECC-1	luminal epithelium:	n/a	chr3:195603752-195603761 chr3:195603753-195603762 chr3:195603791-195603798
46	POLR2A	chr3:195602948-195603965	Hela-S3	cervix:	n/a	n/a
47	RFX5	chr3:195603521-195603885	Hela-S3	cervix:	n/a	n/a
48	IRF1	chr3:195603509-195603860	K562	blood:	n/a	chr3:195603627-195603641 chr3:195603622-195603636 chr3:195603670-195603684
49	TBL1XR1	chr3:195603652-195603799	K562	blood:	n/a	n/a
50	POLR2A	chr3:195603361-195603967	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:195593301..195599220-chr3:195600993..195605430,9	MCF-7	breast:
2	chr3:195600801..195603776-chr3:195621809..195623311,2	MCF-7	breast:
3	chr3:195593517..195599119-chr3:195599450..195605625,8	MCF-7	breast:
4	chr3:195602309..195605964-chr3:195633937..195639111,7	MCF-7	breast:
5	chr3:195601763..195604584-chr3:195636723..195640516,3	K562	blood:
6	chr3:195596788..195599344-chr3:195602164..195605260,3	K562	blood:
7	chr3:195601233..195610120-chr3:195632410..195638442,11	MCF-7	breast:
8	chr17:56736301..56737038-chr3:195603556..195604309,2	Hela-S3	cervix:

Variant related genes	Relation type
TNK2	TF binding region
ENSG00000226155	Chromatin interaction
ENSG00000224614	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000061938	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1001387	chr3:195186128-195661538	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	esv1808194	chr3:195201080-195619882	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
6	esv1849415	chr3:195201080-195619882	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
7	esv1850702	chr3:195201080-195619882	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1006217	chr3:195312401-195643229	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
11	nsv536882	chr3:195312401-195643229	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
12	esv1813494	chr3:195325408-195628669	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
13	esv1809727	chr3:195379484-195619882	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
14	esv1812834	chr3:195379484-195619882	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
15	esv1846733	chr3:195379484-195619882	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
16	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
17	nsv1006165	chr3:195383130-195777211	Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
18	nsv471621	chr3:195417664-195795474	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
19	esv1828044	chr3:195419326-195619882	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
20	esv1830876	chr3:195419326-195619882	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
21	nsv878157	chr3:195421983-195628636	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
22	esv2751988	chr3:195433543-195651349	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
23	esv2756651	chr3:195433543-195696720	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
24	nsv432528	chr3:195433543-195696720	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
25	esv2754016	chr3:195433543-195753766	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
26	nsv822410	chr3:195438740-195725565	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
27	esv2752626	chr3:195460550-195606770	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv1003062	chr3:195473784-195630700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
29	nsv878162	chr3:195475989-195641908	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
30	nsv878163	chr3:195477791-195641908	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
31	nsv997893	chr3:195501392-195642192	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
32	nsv1005193	chr3:195526571-195709662	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
33	nsv878165	chr3:195536040-195606770	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv878166	chr3:195550366-195628636	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
35	nsv878167	chr3:195550366-195637439	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
36	nsv878168	chr3:195553259-195644332	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
37	nsv1002591	chr3:195564086-195643229	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
38	nsv530397	chr3:195565159-195740416	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
39	nsv878169	chr3:195571024-195628636	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
40	nsv593056	chr3:195571024-195656731	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
41	nsv1007235	chr3:195582468-195651911	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
42	nsv1002629	chr3:195582468-195769275	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
43	esv1811906	chr3:195598137-195637469	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
44	esv3360168	chr3:195603605-195606403	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9815549	PDCD6	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195578400-195604800	Weak transcription	GM12878-XiMat	blood
2	chr3:195586800-195608600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:195587000-195603800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:195587400-195604800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:195589000-195612000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:195589400-195621800	Weak transcription	Small Intestine	intestine
7	chr3:195589800-195616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:195589800-195618800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:195589800-195619600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:195590000-195607200	Strong transcription	Thymus	Thymus
11	chr3:195590000-195607400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:195590000-195615600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:195590200-195604000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:195590200-195607400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:195590200-195615800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr3:195590400-195604600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:195590600-195604800	Weak transcription	NHDF-Ad	bronchial
18	chr3:195590600-195617000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:195592000-195607000	Strong transcription	Lung	lung
20	chr3:195592200-195615800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:195592200-195616200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:195592400-195607600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:195592600-195607200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:195593200-195607200	Strong transcription	Fetal Thymus	thymus
25	chr3:195595000-195604800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:195595600-195608800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:195595600-195618800	Weak transcription	Fetal Kidney	kidney
28	chr3:195597400-195611800	Strong transcription	Fetal Stomach	stomach
29	chr3:195597600-195604200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:195597600-195604800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:195598200-195604400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:195598600-195604400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:195598600-195604800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:195598600-195605200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:195598600-195605800	Weak transcription	HUVEC	blood vessel
36	chr3:195599200-195605000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:195599400-195603800	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:195599400-195604400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:195599600-195604000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:195599600-195604200	Weak transcription	Ovary	ovary
41	chr3:195599600-195605000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr3:195599800-195604800	Weak transcription	Left Ventricle	heart
43	chr3:195600000-195604600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:195600200-195604800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr3:195601000-195604000	Weak transcription	Fetal Lung	lung
46	chr3:195601200-195614600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:195601400-195604000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:195601400-195608800	Weak transcription	Osteobl	bone
49	chr3:195601400-195611600	Weak transcription	NH-A	brain
50	chr3:195602000-195604800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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