Variant report

Variant	rs9816771
Chromosome Location	chr3:54381071-54381072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1375518	0.82[YRI][hapmap]
rs1868498	0.87[CEU][hapmap]
rs4974366	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54375600-54382000	Weak transcription	Hela-S3	cervix
2	chr3:54377200-54383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:54377800-54383200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:54378400-54383200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:54378600-54381200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:54378800-54389000	Weak transcription	Psoas Muscle	Psoas
7	chr3:54379000-54382200	Weak transcription	Fetal Lung	lung
8	chr3:54379200-54383200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:54379600-54381200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:54380000-54383000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:54380000-54383200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:54380000-54391200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:54380200-54387200	Weak transcription	Ovary	ovary
14	chr3:54380400-54382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:54380400-54382400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:54381000-54381200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:54381000-54381200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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