Variant report

Variant	rs9817183
Chromosome Location	chr3:61055973-61055974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10222378	0.85[YRI][hapmap]
rs10222544	0.82[YRI][hapmap]
rs11714398	1.00[CEU][hapmap]
rs13074513	0.81[YRI][hapmap]
rs13080291	0.81[YRI][hapmap]
rs13087160	0.81[YRI][hapmap]
rs13099063	0.93[YRI][hapmap]
rs13099398	0.96[YRI][hapmap]
rs13099522	0.96[YRI][hapmap]
rs17064309	1.00[CEU][hapmap]
rs17064314	1.00[CEU][hapmap]
rs17064394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1965143	0.85[YRI][hapmap]
rs28478282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129352	1.00[CEU][hapmap]
rs4132221	1.00[CEU][hapmap]
rs4688146	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs57909679	1.00[EUR][1000 genomes]
rs58852009	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60593254	1.00[EUR][1000 genomes]
rs6763300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6782531	0.82[CHB][hapmap]
rs6783115	1.00[CEU][hapmap]
rs6809125	0.85[YRI][hapmap]
rs72877821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877832	1.00[ASN][1000 genomes]
rs72877833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73836083	1.00[EUR][1000 genomes]
rs73836084	1.00[EUR][1000 genomes]
rs7610473	0.82[YRI][hapmap]
rs7610478	0.85[YRI][hapmap]
rs7630972	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs7650123	0.85[YRI][hapmap]
rs7651235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311794	0.82[YRI][hapmap]
rs9812744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834182	0.96[YRI][hapmap]
rs9836639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843759	0.93[YRI][hapmap]
rs9843941	0.92[YRI][hapmap]
rs9850713	0.85[YRI][hapmap]
rs9860195	0.84[YRI][hapmap]
rs9861400	0.80[YRI][hapmap]
rs9869954	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61033600-61066600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:61051200-61060000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:61054200-61056200	Enhancers	Psoas Muscle	Psoas
4	chr3:61054800-61056200	Enhancers	Skeletal Muscle Female	skeletal muscle

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