Variant report

Variant	rs9817201
Chromosome Location	chr3:179686298-179686299
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10804882	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11715337	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12054457	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2031043	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2031044	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2056597	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3774257	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56383017	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67420747	0.81[ASN][1000 genomes]
rs6764609	0.81[ASN][1000 genomes]
rs67667466	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9822440	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9841654	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9871887	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9875854	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179675800-179688000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179679800-179688000	Weak transcription	Fetal Thymus	thymus
3	chr3:179682200-179686400	Enhancers	Brain Hippocampus Middle	brain
4	chr3:179682200-179688000	Weak transcription	Thymus	Thymus
5	chr3:179682400-179686800	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:179682800-179686800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:179683200-179686400	Genic enhancers	Dnd41	blood
8	chr3:179684400-179686800	Weak transcription	Brain Substantia Nigra	brain
9	chr3:179684600-179686800	Enhancers	Brain Angular Gyrus	brain
10	chr3:179684800-179686400	Enhancers	Osteobl	bone
11	chr3:179684800-179688200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:179685400-179687400	Weak transcription	Brain Anterior Caudate	brain
13	chr3:179685600-179686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:179685600-179686600	Weak transcription	Fetal Brain Male	brain
15	chr3:179685800-179687200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:179685800-179687800	Weak transcription	HMEC	breast
17	chr3:179686000-179691400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:179686200-179687200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:179686200-179687200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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