Variant report
| Variant | rs981755 |
|---|---|
| Chromosome Location | chr5:107785485-107785486 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:107716163..107719153-chr5:107784681..107787772,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145743 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10477892 | 0.84[JPT][hapmap] |
| rs10477897 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11742777 | 0.81[JPT][hapmap] |
| rs12655232 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13153782 | 0.84[JPT][hapmap] |
| rs13161833 | 0.84[JPT][hapmap] |
| rs13173916 | 0.84[JPT][hapmap] |
| rs1421970 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs1588496 | 0.84[JPT][hapmap] |
| rs17161232 | 0.83[CEU][hapmap];0.84[JPT][hapmap] |
| rs17452232 | 0.84[JPT][hapmap] |
| rs1828457 | 0.84[JPT][hapmap] |
| rs1849012 | 0.83[CEU][hapmap];0.84[JPT][hapmap] |
| rs1862196 | 0.84[JPT][hapmap] |
| rs2052464 | 0.84[JPT][hapmap] |
| rs2941693 | 0.84[JPT][hapmap] |
| rs2941694 | 0.85[CEU][hapmap];0.84[JPT][hapmap] |
| rs2941697 | 0.84[JPT][hapmap] |
| rs2966830 | 0.84[JPT][hapmap] |
| rs2966832 | 0.84[JPT][hapmap] |
| rs2966834 | 0.84[JPT][hapmap] |
| rs4524496 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4957755 | 0.84[JPT][hapmap] |
| rs4957756 | 0.84[JPT][hapmap] |
| rs6594298 | 0.84[JPT][hapmap] |
| rs6594299 | 0.84[JPT][hapmap] |
| rs6896653 | 0.84[JPT][hapmap] |
| rs6898607 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7711964 | 0.84[JPT][hapmap] |
| rs7726485 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7735665 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9326726 | 0.83[CEU][hapmap] |
| rs988436 | 0.90[CEU][hapmap];0.84[JPT][hapmap] |
| rs988437 | 0.84[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
