Variant report

Variant	rs9818328
Chromosome Location	chr3:69920548-69920549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11920509	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924822	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13314417	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13316652	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13321948	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17006549	1.00[AMR][1000 genomes]
rs17006569	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17006572	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17006575	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35773003	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41370746	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41440046	1.00[YRI][hapmap]
rs9819125	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9823103	1.00[EUR][1000 genomes]
rs9824148	1.00[EUR][1000 genomes]
rs9827219	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827735	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833046	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833501	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837171	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9838445	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843115	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850565	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9859340	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69915800-69928400	Weak transcription	Pancreas	Pancrea
2	chr3:69916000-69922000	Weak transcription	Aorta	Aorta
3	chr3:69916200-69924800	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:69916400-69933400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:69916800-69931200	Weak transcription	Fetal Stomach	stomach
6	chr3:69917000-69922000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:69917200-69951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:69917600-69921800	Enhancers	Fetal Heart	heart
9	chr3:69917800-69920600	Enhancers	Left Ventricle	heart
10	chr3:69918600-69928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:69918800-69923600	Weak transcription	Right Ventricle	heart
12	chr3:69919000-69921800	Enhancers	A549	lung
13	chr3:69919000-69921800	Weak transcription	NHLF	lung
14	chr3:69919000-69924200	Weak transcription	Gastric	stomach
15	chr3:69919200-69921400	Weak transcription	Hela-S3	cervix
16	chr3:69919200-69921800	Weak transcription	K562	blood
17	chr3:69920000-69920800	Enhancers	Right Atrium	heart
18	chr3:69920000-69921000	Enhancers	Psoas Muscle	Psoas
19	chr3:69920000-69921000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:69920000-69921200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:69920000-69921600	Enhancers	Stomach Mucosa	stomach
22	chr3:69920000-69922200	Enhancers	Colon Smooth Muscle	Colon
23	chr3:69920000-69923000	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:69920000-69932600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:69920200-69921000	Enhancers	HSMM	muscle
26	chr3:69920400-69920800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:69920400-69920800	Enhancers	Fetal Kidney	kidney
28	chr3:69920400-69920800	Enhancers	Ovary	ovary
29	chr3:69920400-69921200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr3:69920400-69922000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:69920400-69922600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:69920400-69932800	Weak transcription	Adipose Nuclei	Adipose

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