Variant report

Variant	rs981894
Chromosome Location	chr3:100632415-100632416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2576368	0.90[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100599600-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:100617600-100641000	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:100617800-100641000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:100621600-100633400	Weak transcription	HSMMtube	muscle
5	chr3:100630200-100634200	Weak transcription	NHLF	lung
6	chr3:100630200-100673600	Weak transcription	Ovary	ovary
7	chr3:100630400-100647000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:100631000-100633400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:100631600-100632600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:100631600-100633400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:100631600-100635800	Enhancers	HUVEC	blood vessel
12	chr3:100631800-100632800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr3:100631800-100633000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:100631800-100633400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:100631800-100635000	Enhancers	NHDF-Ad	bronchial
16	chr3:100631800-100635000	Enhancers	Osteobl	bone
17	chr3:100632000-100633200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:100632000-100634400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:100632200-100633600	Enhancers	Fetal Stomach	stomach
20	chr3:100632200-100634400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:100632400-100639800	Weak transcription	Muscle Satellite Cultured Cells	--

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