Variant report

Variant	rs9818948
Chromosome Location	chr3:115708732-115708733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13075363	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13077497	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13090526	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13315620	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13319721	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17630430	0.82[AMR][1000 genomes]
rs1920360	0.90[AMR][1000 genomes]
rs28413947	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34543919	0.86[AMR][1000 genomes]
rs34705863	0.86[AMR][1000 genomes]
rs35080450	0.90[AMR][1000 genomes]
rs35470268	0.86[AMR][1000 genomes]
rs4277685	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4518123	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831211	0.85[ASN][1000 genomes]
rs4831214	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4831216	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4831226	0.86[AMR][1000 genomes]
rs56265174	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62271281	0.86[AMR][1000 genomes]
rs9283564	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289030	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289031	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289032	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9818250	0.82[ASN][1000 genomes]
rs9841923	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9856549	0.82[ASN][1000 genomes]
rs9858539	0.82[AMR][1000 genomes]
rs9865369	0.82[ASN][1000 genomes]
rs9868706	0.86[AMR][1000 genomes]
rs9871164	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9871331	0.81[ASN][1000 genomes]
rs9871905	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115700600-115711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:115705400-115709400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:115706000-115713600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:115706200-115709000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:115706200-115709000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:115706200-115709000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:115706200-115709000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:115706400-115708800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:115706400-115709000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:115707600-115709800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:115708000-115709600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:115708200-115709600	Enhancers	NHDF-Ad	bronchial
13	chr3:115708400-115708800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:115708400-115709200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:115708400-115709600	Enhancers	HSMM	muscle
16	chr3:115708400-115709600	Enhancers	HSMMtube	muscle
17	chr3:115708400-115709600	Enhancers	NH-A	brain
18	chr3:115708400-115709600	Enhancers	Osteobl	bone
19	chr3:115708400-115709800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:115708400-115710600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:115708600-115709200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:115708600-115709400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:115708600-115709400	Enhancers	Brain Anterior Caudate	brain
24	chr3:115708600-115709600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:115708600-115715200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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