Variant report

Variant	rs9818964
Chromosome Location	chr3:70120616-70120617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1027234	0.83[ASN][1000 genomes]
rs1491700	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17729465	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17729489	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17785756	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4855335	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6763730	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6799525	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7645353	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7651972	0.87[AFR][1000 genomes]
rs9310181	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9815027	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9837453	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9840951	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9856462	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9818964	RP11-460N16.1	cis	Artery Aorta	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70113800-70123800	Weak transcription	Gastric	stomach
2	chr3:70117200-70121200	Weak transcription	Psoas Muscle	Psoas
3	chr3:70118200-70120800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:70119000-70120800	Weak transcription	Aorta	Aorta
5	chr3:70120200-70120800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:70120200-70121800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr3:70120200-70121800	Active TSS	Brain Angular Gyrus	brain
8	chr3:70120400-70121000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:70120400-70121200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr3:70120400-70121200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:70120400-70121200	Bivalent Enhancer	Brain Germinal Matrix	brain
12	chr3:70120400-70121600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:70120400-70121600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr3:70120400-70121600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:70120400-70121600	Active TSS	Brain Cingulate Gyrus	brain
16	chr3:70120400-70121800	Active TSS	Brain Hippocampus Middle	brain
17	chr3:70120400-70121800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr3:70120400-70121800	Active TSS	Stomach Smooth Muscle	stomach
19	chr3:70120600-70120800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:70120600-70121000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:70120600-70121000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:70120600-70121000	Enhancers	Fetal Heart	heart
23	chr3:70120600-70121000	Bivalent Enhancer	Fetal Lung	lung
24	chr3:70120600-70121200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:70120600-70121200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:70120600-70121200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr3:70120600-70121200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr3:70120600-70121600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr3:70120600-70121600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr3:70120600-70121800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:70120600-70121800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr3:70120600-70121800	Active TSS	Brain Substantia Nigra	brain

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