Variant report

Variant	rs9819378
Chromosome Location	chr3:94027941-94027942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94021756..94024781-chr3:94027774..94031096,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1031499	0.96[ASN][1000 genomes]
rs11919975	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11924976	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11925938	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11926658	0.80[ASN][1000 genomes]
rs13317027	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1470955	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1492013	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1584923	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1584926	0.80[ASN][1000 genomes]
rs1902103	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28528118	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28566994	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28690421	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4395400	0.80[ASN][1000 genomes]
rs56212636	0.80[ASN][1000 genomes]
rs56389402	0.80[ASN][1000 genomes]
rs57572900	0.80[ASN][1000 genomes]
rs58561740	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59411977	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62266974	0.92[EUR][1000 genomes]
rs62266997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62267007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776344	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6782167	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6788072	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7618679	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7623613	0.80[ASN][1000 genomes]
rs7623767	0.80[ASN][1000 genomes]
rs7633025	0.80[ASN][1000 genomes]
rs897185	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9682952	0.82[ASN][1000 genomes]
rs977082	0.80[ASN][1000 genomes]
rs9818721	0.80[ASN][1000 genomes]
rs9819723	0.80[ASN][1000 genomes]
rs9832039	0.83[AFR][1000 genomes]
rs9834581	0.80[ASN][1000 genomes]
rs9841043	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9841554	0.85[AFR][1000 genomes]
rs9842401	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9858367	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9860831	0.80[ASN][1000 genomes]
rs9863555	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9868593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870104	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877808	0.89[EUR][1000 genomes]
rs9883747	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1013107	chr3:93654100-94102212	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv536648	chr3:93654100-94102212	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv877163	chr3:93795972-94047775	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1000265	chr3:94012384-94259057	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv536650	chr3:94012384-94259057	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv877164	chr3:94018657-94146460	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877165	chr3:94018657-94160736	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94025600-94030000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:94025600-94030600	Weak transcription	Fetal Lung	lung
3	chr3:94025800-94029400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:94025800-94030200	Weak transcription	Brain Anterior Caudate	brain
5	chr3:94026000-94028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:94026000-94030200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:94027800-94028200	Enhancers	Fetal Intestine Large	intestine
8	chr3:94027800-94028400	Enhancers	Rectal Mucosa Donor 31	rectum

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