Variant report
| Variant | rs981993 |
|---|---|
| Chromosome Location | chr3:59469850-59469851 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11922455 | 0.99[ASN][1000 genomes] |
| rs1502618 | 0.91[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1502619 | 0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4679575 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6446062 | 0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6446063 | 0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6772601 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6785711 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7612307 | 0.91[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7620213 | 0.84[ASN][1000 genomes] |
| rs7623783 | 0.91[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7625776 | 0.91[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7626018 | 0.90[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs981994 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9842758 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9862437 | 0.81[ASN][1000 genomes] |
| rs9862576 | 0.81[ASN][1000 genomes] |
| rs9870523 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9880493 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9881871 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011181 | chr3:58665373-59542339 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv536574 | chr3:58665373-59542339 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv534257 | chr3:58855959-59606464 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:59468600-59470400 | Weak transcription | Placenta Amnion | Placenta Amnion |
